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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00123
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00123
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-176
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.69 | 54.0 | 4.78e-01 | 85.0% | 58.2% |
| 2rckA01 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.69 | 63.0 | 4.87e-01 | 100.0% | 95.9% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.69 | 63.0 | 4.88e-01 | 100.0% | 97.2% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 51.0 | 4.71e-01 | 80.0% | 96.9% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.67 | 50.0 | 4.73e-01 | 81.0% | 66.4% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 46.0 | 4.18e-01 | 73.0% | 100.0% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 49.0 | 4.19e-01 | 79.0% | 95.6% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 45.0 | 4.13e-01 | 72.0% | 97.7% |
| 1a87A01 | 3.30.1120.60 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin | 0.61 | 48.0 | 4.91e-01 | 96.0% | 89.7% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.60 | 39.0 | 4.45e-01 | 87.0% | 92.9% |
| 4mmhA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.60 | 49.0 | 3.62e-01 | 90.0% | 81.9% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.60 | 54.0 | 4.19e-01 | 100.0% | 95.3% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 42.0 | 4.01e-01 | 74.0% | 98.3% |
| 6iy8A01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.59 | 44.0 | 3.57e-01 | 92.0% | 41.3% |
| 2je6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.59 | 52.0 | 3.86e-01 | 98.0% | 84.3% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.58 | 33.0 | 3.77e-01 | 89.0% | 73.7% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 44.0 | 3.92e-01 | 80.0% | 90.3% |
| 2hqyA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 39.0 | 3.37e-01 | 71.0% | 64.3% |
| 4iusA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 42.0 | 3.15e-01 | 79.0% | 39.3% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.56 | 39.0 | 3.52e-01 | 72.0% | 68.6% |
| 7b3aA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 41.0 | 3.64e-01 | 77.0% | 67.8% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 41.0 | 3.40e-01 | 91.0% | 42.6% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.56 | 40.0 | 3.46e-01 | 81.0% | 48.4% |
| 2fgeA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 41.0 | 3.04e-01 | 77.0% | 92.4% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.55 | 48.0 | 4.17e-01 | 97.0% | 92.9% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 33.0 | 3.72e-01 | 93.0% | 80.0% |
| 4mtsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 40.0 | 3.68e-01 | 76.0% | 79.8% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.54 | 46.0 | 4.54e-01 | 91.0% | 89.8% |
| 1bh5A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 40.0 | 3.27e-01 | 76.0% | 70.6% |
| 1y79101 | 1.10.1370.40 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.54 | 41.0 | 2.74e-01 | 81.0% | 21.9% |
| 2r5vB02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 41.0 | 3.36e-01 | 89.0% | 42.6% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 37.0 | 3.24e-01 | 71.0% | 59.7% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.53 | 40.0 | 4.37e-01 | 93.0% | 98.8% |
| 3e5dA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 39.0 | 3.65e-01 | 78.0% | 85.6% |
| 6bnzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 40.0 | 3.56e-01 | 79.0% | 77.9% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.53 | 46.0 | 3.75e-01 | 99.0% | 96.4% |
| 2qe8A00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 45.0 | 3.20e-01 | 98.0% | 84.9% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 41.0 | 3.44e-01 | 83.0% | 54.6% |
| 3cqzH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 35.0 | 3.36e-01 | 70.0% | 96.6% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 45.0 | 3.16e-01 | 97.0% | 37.1% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.51 | 37.0 | 4.09e-01 | 93.0% | 98.7% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.50 | 38.0 | 3.15e-01 | 80.0% | 85.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029448 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.70 | 52.0 | 4.43e-01 | 78.0% | 83.1% |
| 4949965 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.64 | 43.0 | 3.71e-01 | 87.0% | 44.5% |
| 5039311 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.62 | 41.0 | 3.58e-01 | 84.0% | 44.7% |
| 4970858 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.62 | 52.0 | 5.12e-01 | 97.0% | 84.5% |
| 2443846 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 45.0 | 3.88e-01 | 76.0% | 88.5% |
| 1866557 | 873.1.1.2 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R,XylR_N | 0.62 | 46.0 | 3.65e-01 | 94.0% | 39.1% |
| 4969137 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 40.0 | 4.69e-01 | 89.0% | 95.7% |
| 2629366 | 873.1.1.2 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R,XylR_N | 0.61 | 45.0 | 3.56e-01 | 93.0% | 37.0% |
| 3653398 | 331.9.1.10 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 | 0.61 | 51.0 | 4.35e-01 | 89.0% | 69.7% |
| 5003053 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.61 | 40.0 | 3.52e-01 | 84.0% | 43.9% |
| 3654480 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 44.0 | 3.08e-01 | 77.0% | 34.1% |
| 3168414 | 4099.1.1.46 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 | 0.60 | 44.0 | 4.10e-01 | 77.0% | 89.6% |
| 5075628 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.59 | 40.0 | 3.51e-01 | 94.0% | 45.3% |
| 3263284 | 12.3.1.46 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD | 0.59 | 46.0 | 3.54e-01 | 84.0% | 96.6% |
| 3326501 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 44.0 | 3.11e-01 | 81.0% | 96.5% |
| 3236101 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 45.0 | 4.53e-01 | 88.0% | 84.0% |
| 3697643 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.56 | 39.0 | 3.26e-01 | 99.0% | 39.7% |
| 3782836 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 41.0 | 2.79e-01 | 78.0% | 25.8% |
| 2582168 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.55 | 48.0 | 4.13e-01 | 97.0% | 60.6% |
| 3926862 | 243.3.1.36 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Herpes_UL52 | 0.54 | 48.0 | 4.54e-01 | 100.0% | 97.5% |
| 5044559 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 37.0 | 4.09e-01 | 99.0% | 90.0% |
| 4946188 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 37.0 | 4.01e-01 | 100.0% | 87.5% |
| 3435396 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.53 | 38.0 | 3.98e-01 | 89.0% | 83.3% |
| 3192385 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 36.0 | 2.91e-01 | 70.0% | 61.0% |
| 4956661 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.53 | 41.0 | 3.63e-01 | 82.0% | 84.8% |
| 5020511 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.53 | 40.0 | 3.84e-01 | 86.0% | 69.6% |
| 3965967 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 36.0 | 3.63e-01 | 79.0% | 71.0% |
| 3369128 | 2004.1.1.615 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 | 0.52 | 39.0 | 2.51e-01 | 94.0% | 14.8% |
| 3502940 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 38.0 | 3.85e-01 | 78.0% | 96.0% |
| 4935086 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.51 | 39.0 | 3.43e-01 | 82.0% | 78.1% |
| 3394971 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 43.0 | 3.72e-01 | 95.0% | 93.1% |
| 4990953 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.50 | 34.0 | 3.23e-01 | 70.0% | 62.9% |
| 4572149 | 809.2.1.4 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › Herpes_UL52 | 0.50 | 42.0 | 4.30e-01 | 94.0% | 97.9% |
| 3707052 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 42.0 | 2.75e-01 | 92.0% | 40.8% |
| 4021395 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 37.0 | 2.66e-01 | 80.0% | 25.2% |