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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00129

Bact-Vir

LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00129

Identity

Kingdom:
phage

Quality

55.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 241-338
PDB
D2 medium residues 1-59
PDB
D3 medium residues 60-159
PDB
D4 medium residues 367-424
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.73 63.0 4.30e-01 98.3% 41.0%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.68 43.0 4.70e-01 70.7% 84.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 45.0 4.43e-01 72.4% 76.2%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 47.0 4.00e-01 77.6% 94.9%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.66 53.0 4.62e-01 89.7% 72.7%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.65 51.0 4.41e-01 86.2% 65.2%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 53.0 4.36e-01 93.1% 93.8%
1kxlA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 46.0 3.27e-01 75.9% 71.1%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.64 45.0 4.06e-01 93.1% 55.8%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.62 52.0 4.32e-01 96.6% 75.2%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.62 43.0 4.26e-01 72.4% 75.0%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.53e-01 75.9% 77.9%
2e4uA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 44.0 3.19e-01 74.1% 27.2%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.62 51.0 5.02e-01 96.6% 90.8%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 50.0 3.71e-01 91.4% 49.7%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 50.0 3.76e-01 93.1% 52.0%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 48.0 4.16e-01 89.7% 54.2%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 53.0 3.97e-01 98.3% 89.4%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 53.0 4.09e-01 98.3% 50.8%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 48.0 3.28e-01 98.3% 23.7%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.72e-01 93.1% 53.8%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 3.59e-01 91.4% 51.7%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.59 43.0 3.68e-01 82.8% 72.6%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 2.93e-01 98.3% 34.6%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 48.0 4.43e-01 100.0% 100.0%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 48.0 3.13e-01 100.0% 26.1%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.56 47.0 3.46e-01 98.3% 36.7%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 3.76e-01 87.9% 86.3%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 3.57e-01 87.9% 76.9%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 3.59e-01 100.0% 47.7%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 44.0 4.04e-01 96.6% 94.0%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.34e-01 93.1% 41.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 44.0 3.45e-01 94.8% 62.1%
3hxlA05 3.30.360.90 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.54 36.0 3.50e-01 70.7% 75.4%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.46e-01 79.3% 18.5%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 42.0 3.16e-01 87.9% 51.3%
4dlqA03 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.54 45.0 3.22e-01 100.0% 79.3%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.57e-01 93.1% 79.6%
2ex2A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.87e-01 93.1% 68.6%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.79e-01 98.3% 28.5%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 44.0 2.90e-01 100.0% 23.4%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.52 40.0 2.81e-01 89.7% 27.1%
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 2.77e-01 91.4% 66.5%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.52 46.0 3.11e-01 100.0% 82.9%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.31e-01 81.0% 75.3%
2ltjA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.51 36.0 3.04e-01 77.6% 94.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.55e-01 94.8% 69.2%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.51 41.0 3.19e-01 93.1% 37.8%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.51 43.0 3.09e-01 96.6% 96.7%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.54e-01 94.8% 100.0%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.50 42.0 3.15e-01 96.6% 79.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597728 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 52.0 4.47e-01 77.6% 98.9%
5036092 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.71 62.0 4.20e-01 100.0% 38.6%
3462090 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.68 49.0 2.97e-01 75.9% 21.7%
3685990 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 59.0 4.22e-01 100.0% 43.3%
5053654 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 53.0 4.23e-01 87.9% 43.3%
3207613 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 57.0 4.22e-01 100.0% 38.0%
4991488 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 46.0 3.36e-01 74.1% 30.3%
4957146 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.66 54.0 3.75e-01 98.3% 39.1%
4011507 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 51.0 3.60e-01 89.7% 26.3%
3226032 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 46.0 4.83e-01 74.1% 96.2%
1014 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.66 46.0 4.92e-01 84.5% 95.6%
3742847 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.64 50.0 3.55e-01 89.7% 26.8%
5013673 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 46.0 3.34e-01 79.3% 98.9%
3936758 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.64 41.0 4.05e-01 72.4% 60.0%
4458313 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 45.0 3.71e-01 75.9% 88.6%
2557281 7575.1.1.4 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.63 55.0 3.37e-01 98.3% 17.7%
2391407 12.3.1.35 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GalA_N 0.63 47.0 3.28e-01 81.0% 75.4%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.83e-01 89.7% 41.5%
176 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.62 51.0 5.07e-01 96.6% 93.7%
3448363 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 44.0 2.95e-01 75.9% 32.6%
3579842 5.1.4.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.61 54.0 3.27e-01 98.3% 22.4%
9393 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.60 48.0 3.22e-01 91.4% 76.0%
4029821 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 53.0 3.52e-01 98.3% 31.7%
4926836 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.75e-01 89.7% 43.2%
5050119 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 46.0 4.06e-01 86.2% 62.2%
3417117 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 3.21e-01 98.3% 25.2%
5008603 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 47.0 3.32e-01 89.7% 42.1%
3404226 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.24e-01 98.3% 26.0%
4680387 1.1.10.0 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.58 44.0 4.02e-01 82.8% 87.5%
3783069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 2.97e-01 98.3% 20.0%
4928046 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.62e-01 87.9% 52.5%
5044876 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 44.0 4.07e-01 87.9% 86.3%
3215406 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 48.0 2.89e-01 96.6% 32.8%
3484052 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.02e-01 96.6% 28.0%
3938391 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.57 49.0 3.06e-01 98.3% 21.5%
3224940 5.1.5.105 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.57 49.0 2.99e-01 98.3% 18.7%
3368959 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.39e-01 98.3% 41.0%
3241917 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 44.0 2.87e-01 87.9% 23.2%
3496494 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.02e-01 100.0% 21.7%
4019954 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.56 42.0 2.60e-01 81.0% 14.5%
3200223 5.1.4.31 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.55 46.0 2.58e-01 96.6% 12.9%
3789270 5.1.4.115 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CRT10 0.55 47.0 2.76e-01 98.3% 81.1%
4453642 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.16e-01 89.7% 41.7%
4946325 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.62e-01 89.7% 78.1%
3601482 5.1.4.17 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A,MMS1_N 0.55 47.0 2.60e-01 98.3% 11.9%
3704604 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.55 38.0 3.26e-01 74.1% 70.0%
4030034 109.4.1.1140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.55 47.0 2.78e-01 98.3% 18.0%
4030001 5.1.4.621 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid 0.55 46.0 2.62e-01 96.6% 14.7%
3598882 4086.1.1.0 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like 0.54 37.0 3.42e-01 74.1% 63.7%
3192969 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 45.0 2.68e-01 96.6% 25.3%
4396540 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.53 47.0 3.33e-01 100.0% 41.6%
4363149 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 47.0 2.57e-01 100.0% 8.6%
147039 3251.1.1.1 a+b two layers › C-terminal domain in putative protease YP_001302526.1 › C-terminal domain in putative protease YP_001302526.1 › C-terminal domain in putative protease YP_001302526.1 › DUF3858 0.53 39.0 3.06e-01 82.8% 87.1%
3285297 213.1.1.36 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_17 0.52 46.0 3.33e-01 98.3% 55.0%
3509056 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.52 37.0 2.96e-01 75.9% 35.2%
3732470 244.1.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.52 41.0 2.92e-01 87.9% 29.2%
4961746 304.8.1.122 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.52 40.0 3.32e-01 87.9% 74.8%
3553623 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.52 41.0 3.31e-01 93.1% 41.6%
3728267 244.1.1.35 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › NAD_binding_8 0.52 37.0 2.82e-01 79.3% 29.7%
4227875 9.4.1.4 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.52 39.0 3.02e-01 84.5% 79.3%
4050578 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 42.0 3.34e-01 93.1% 48.0%
3446490 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.51 43.0 2.65e-01 96.6% 28.5%
3496857 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.17e-01 81.0% 71.4%