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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00185
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00185
Identity
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-62
Domain cluster:
rep: NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00308__D2-54
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.69 | 62.0 | 5.36e-01 | 100.0% | 81.1% |
| 1x3bA00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.63 | 42.0 | 3.15e-01 | 83.1% | 28.1% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.62 | 45.0 | 3.42e-01 | 79.7% | 87.0% |
| 2k5iA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.61 | 53.0 | 4.91e-01 | 100.0% | 75.6% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 4.12e-01 | 100.0% | 94.7% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 52.0 | 4.83e-01 | 98.3% | 77.6% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.60 | 44.0 | 3.30e-01 | 81.4% | 89.8% |
| 3vwcA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 49.0 | 3.80e-01 | 100.0% | 97.3% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.56 | 48.0 | 3.93e-01 | 100.0% | 69.2% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 34.0 | 3.14e-01 | 91.5% | 43.2% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 2.98e-01 | 100.0% | 24.8% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 40.0 | 2.65e-01 | 83.1% | 61.7% |
| 2l3tA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 36.0 | 3.09e-01 | 79.7% | 42.0% |
| 3s6gA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 41.0 | 3.16e-01 | 88.1% | 64.4% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.52 | 42.0 | 3.92e-01 | 91.5% | 84.6% |
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 39.0 | 2.97e-01 | 81.4% | 50.0% |
| 1m2xA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 38.0 | 2.59e-01 | 78.0% | 56.6% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 38.0 | 3.30e-01 | 79.7% | 86.3% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 4.21e-01 | 100.0% | 81.9% |
| 1y7xA01 | 2.30.30.550 | Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat | 0.52 | 34.0 | 3.69e-01 | 100.0% | 85.1% |
| 2woyA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 46.0 | 3.33e-01 | 100.0% | 38.6% |
| 3gfoA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 2.92e-01 | 100.0% | 63.7% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 40.0 | 2.82e-01 | 93.2% | 71.8% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 39.0 | 2.82e-01 | 93.2% | 71.9% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 46.0 | 3.33e-01 | 100.0% | 39.4% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 40.0 | 3.09e-01 | 98.3% | 64.1% |
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.50 | 37.0 | 3.33e-01 | 79.7% | 68.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1144827 | 4.1.1.79 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3601 | 0.69 | 62.0 | 5.38e-01 | 100.0% | 82.0% |
| 4244236 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.68 | 53.0 | 4.32e-01 | 100.0% | 45.5% |
| 3259841 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 60.0 | 5.73e-01 | 100.0% | 91.4% |
| 4118011 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.65 | 57.0 | 5.11e-01 | 100.0% | 71.8% |
| 3214234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 53.0 | 5.30e-01 | 100.0% | 95.0% |
| 3473172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 52.0 | 4.72e-01 | 100.0% | 75.0% |
| 3788782 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.57 | 47.0 | 2.78e-01 | 93.2% | 49.1% |
| 3933335 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.57 | 47.0 | 2.74e-01 | 93.2% | 47.9% |
| 3599997 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.58e-01 | 93.2% | 71.5% |
| 3177726 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 42.0 | 3.03e-01 | 81.4% | 70.3% |
| 3170622 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.57 | 45.0 | 2.54e-01 | 93.2% | 71.2% |
| 3995314 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 42.0 | 3.38e-01 | 84.7% | 88.1% |
| 3712649 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.56 | 46.0 | 2.76e-01 | 94.9% | 48.1% |
| 3346721 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.56 | 37.0 | 3.01e-01 | 71.2% | 67.7% |
| 3938546 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.55 | 47.0 | 4.33e-01 | 100.0% | 96.2% |
| 3977220 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.54 | 42.0 | 2.83e-01 | 88.1% | 72.3% |
| 4583096 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 41.0 | 2.79e-01 | 83.1% | 54.9% |
| 3817230 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.54 | 47.0 | 3.37e-01 | 100.0% | 33.5% |
| 3764049 | 2004.1.1.442 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 | 0.54 | 47.0 | 3.02e-01 | 100.0% | 75.7% |
| 3494678 | 220.1.1.60 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH | 0.53 | 46.0 | 3.11e-01 | 100.0% | 72.3% |
| 3213192 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.53 | 44.0 | 2.67e-01 | 100.0% | 15.5% |
| 3652009 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 46.0 | 3.62e-01 | 100.0% | 76.2% |
| 3207742 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.53 | 42.0 | 2.98e-01 | 93.2% | 57.7% |
| 3372155 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 46.0 | 3.66e-01 | 100.0% | 75.2% |
| 4029165 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.53 | 45.0 | 2.75e-01 | 100.0% | 84.0% |
| 3975468 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.52 | 40.0 | 2.80e-01 | 83.1% | 29.3% |
| 3402026 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.52 | 43.0 | 2.60e-01 | 100.0% | 16.7% |
| 3268736 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.52 | 43.0 | 2.59e-01 | 100.0% | 16.4% |
| 4958701 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.52 | 43.0 | 3.35e-01 | 93.2% | 84.4% |
| 3738266 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.52 | 43.0 | 2.54e-01 | 100.0% | 14.0% |
| 4947045 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 44.0 | 2.93e-01 | 100.0% | 58.5% |
| 3472797 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.52 | 41.0 | 3.25e-01 | 93.2% | 81.4% |
| 3483729 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 41.0 | 3.43e-01 | 94.9% | 97.5% |
| None | — | 0.51 | 44.0 | 3.41e-01 | 100.0% | 68.6% | |
| 3940272 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.51 | 40.0 | 2.53e-01 | 94.9% | 26.7% |
| 3957225 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 42.0 | 3.31e-01 | 98.3% | 44.3% |
| 4942076 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.50 | 34.0 | 2.87e-01 | 72.9% | 49.6% |
| 3997445 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.50 | 39.0 | 2.34e-01 | 88.1% | 17.7% |