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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00208
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00208
Identity
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-159_300-341
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gd0A01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.82 | 79.0 | 7.14e-01 | 100.0% | 97.2% |
| 3zs3A00 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.74 | 70.0 | 6.68e-01 | 100.0% | 99.5% |
| 5h4eA01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.73 | 70.0 | 6.54e-01 | 99.5% | 100.0% |
| 7p0eA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 28.0 | 3.83e-01 | 95.9% | 84.8% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 31.0 | 3.91e-01 | 95.4% | 97.2% |
| 2e8yA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 25.0 | 3.51e-01 | 84.7% | 95.6% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 27.0 | 3.56e-01 | 99.0% | 96.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4385733 | 11.8.1.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › Glyco_hydro_64 | 0.67 | 61.0 | 6.08e-01 | 100.0% | 92.5% |
| 4959964 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.58 | 27.0 | 3.90e-01 | 100.0% | 93.5% |
| 140125 | 11.1.1.93 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 | 0.54 | 31.0 | 3.91e-01 | 95.4% | 97.2% |
| 3283006 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 27.0 | 3.73e-01 | 100.0% | 96.0% |
| 220098 | 11.1.1.93 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 | 0.52 | 27.0 | 3.56e-01 | 99.0% | 96.9% |
D2
high
residues 169-291
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jb9H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 33.0 | 4.10e-01 | 93.5% | 96.1% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.56 | 34.0 | 3.80e-01 | 86.2% | 78.7% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 39.0 | 3.78e-01 | 99.2% | 63.1% |
| 1z01A01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.53 | 46.0 | 3.53e-01 | 94.3% | 66.1% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 29.0 | 3.67e-01 | 93.5% | 100.0% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 30.0 | 3.62e-01 | 92.7% | 95.9% |
| 4u3tB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 39.0 | 3.02e-01 | 84.6% | 96.5% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 32.0 | 3.40e-01 | 92.7% | 72.4% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 28.0 | 3.10e-01 | 86.2% | 65.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3229415 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.61 | 37.0 | 4.58e-01 | 74.0% | 98.7% |
| 4016022 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 32.0 | 3.94e-01 | 91.9% | 88.0% |
| 3278058 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.56 | 33.0 | 3.84e-01 | 87.8% | 86.3% |
| 3593335 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 38.0 | 2.91e-01 | 82.9% | 30.4% |
| 3295485 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 40.0 | 3.00e-01 | 76.4% | 42.8% |
| 3997242 | 5.1.3.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth | 0.55 | 49.0 | 3.56e-01 | 98.4% | 77.0% |
| 3167351 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.54 | 32.0 | 3.70e-01 | 91.9% | 80.7% |
| 4987003 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.53 | 27.0 | 3.60e-01 | 95.1% | 92.3% |
| None | — | 0.53 | 46.0 | 3.47e-01 | 98.4% | 76.6% | |
| 5072459 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 28.0 | 3.38e-01 | 80.5% | 82.7% |
| 3185683 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 42.0 | 3.53e-01 | 88.6% | 69.1% |
| 4150469 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.52 | 26.0 | 3.10e-01 | 84.6% | 72.0% |
| 1120986 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.52 | 29.0 | 3.65e-01 | 93.5% | 98.5% |
| 3801170 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.52 | 44.0 | 3.59e-01 | 94.3% | 79.0% |
| 4990775 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.51 | 30.0 | 3.55e-01 | 95.1% | 90.7% |
| 3474038 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 45.0 | 4.34e-01 | 98.4% | 97.9% |
| 2581118 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.51 | 30.0 | 3.17e-01 | 92.7% | 63.2% |
| 3258918 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.50 | 31.0 | 3.38e-01 | 92.7% | 72.4% |
| 3925748 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.50 | 31.0 | 3.79e-01 | 91.9% | 100.0% |
D3
high
residues 364-470
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bwsA01 | 2.60.40.3070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 47.0 | 5.19e-01 | 100.0% | 92.9% |
| 5aq0B00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.66 | 47.0 | 5.22e-01 | 100.0% | 95.1% |
| 7lhgC02 | 2.60.40.2610 | Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein FimD, plug domain | 0.63 | 43.0 | 4.52e-01 | 100.0% | 79.8% |
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.62 | 44.0 | 4.90e-01 | 100.0% | 96.3% |
| 3rfzB04 | 2.60.40.2610 | Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein FimD, plug domain | 0.60 | 42.0 | 4.49e-01 | 100.0% | 84.6% |
| 4fxtA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.58 | 44.0 | 4.78e-01 | 100.0% | 97.7% |
| 3vgfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 4.41e-01 | 82.2% | 90.6% |
| 1z0mA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 4.37e-01 | 93.5% | 96.6% |
| 2wanA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 4.09e-01 | 90.7% | 83.3% |
| 4j31A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 41.0 | 2.87e-01 | 90.7% | 26.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060514 | 11.1.1.1407 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3869 | 0.74 | 41.0 | 5.28e-01 | 90.7% | 96.7% |
| 5012582 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.71 | 41.0 | 5.13e-01 | 99.1% | 100.0% |
| 5079430 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.70 | 47.0 | 5.36e-01 | 100.0% | 92.5% |
| 4508115 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.69 | 47.0 | 5.49e-01 | 100.0% | 100.0% |
| 4959665 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.68 | 45.0 | 5.22e-01 | 94.4% | 96.0% |
| 5025178 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.68 | 45.0 | 5.23e-01 | 100.0% | 96.0% |
| 5061282 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.67 | 45.0 | 5.24e-01 | 98.1% | 98.7% |
| 5007187 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.65 | 43.0 | 5.03e-01 | 100.0% | 97.3% |
| 5003889 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.65 | 45.0 | 5.11e-01 | 98.1% | 96.2% |
| 3981644 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.64 | 45.0 | 5.13e-01 | 99.1% | 97.5% |
| 3978781 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.64 | 45.0 | 4.92e-01 | 100.0% | 90.6% |
| 4004343 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.64 | 45.0 | 5.02e-01 | 100.0% | 92.9% |
| 4010206 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.64 | 44.0 | 4.86e-01 | 100.0% | 89.4% |
| 3945579 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.63 | 42.0 | 4.77e-01 | 99.1% | 92.5% |
| 4933384 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.63 | 42.0 | 4.84e-01 | 98.1% | 97.3% |
| 3970113 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.62 | 43.0 | 4.79e-01 | 100.0% | 95.0% |
| 5055379 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.62 | 43.0 | 4.92e-01 | 100.0% | 97.5% |
| 3946083 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.62 | 43.0 | 4.70e-01 | 100.0% | 90.6% |
| 4119227 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.61 | 43.0 | 4.78e-01 | 100.0% | 96.2% |
| 5035182 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.61 | 43.0 | 4.92e-01 | 100.0% | 98.8% |
| 4880358 | 11.1.1.11 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher | 0.61 | 42.0 | 4.60e-01 | 100.0% | 87.5% |
| 3509815 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.61 | 42.0 | 4.46e-01 | 100.0% | 81.1% |
| 4200814 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.61 | 42.0 | 4.64e-01 | 100.0% | 90.6% |
| 3968394 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.60 | 41.0 | 4.61e-01 | 100.0% | 93.8% |
| 3945619 | 11.1.4.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Usher | 0.60 | 42.0 | 4.68e-01 | 100.0% | 96.2% |
| 3942075 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.60 | 45.0 | 4.85e-01 | 100.0% | 96.6% |
| 4009551 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.59 | 43.0 | 4.70e-01 | 100.0% | 97.6% |
| 3375415 | 11.1.4.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CBM_20 | 0.53 | 43.0 | 4.13e-01 | 100.0% | 75.2% |
| 3273353 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.52 | 37.0 | 4.06e-01 | 90.7% | 91.8% |
| 3353972 | 11.1.1.207 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM | 0.51 | 35.0 | 3.59e-01 | 90.7% | 73.3% |