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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00225
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00225
Identity
- Kingdom:
- phage
Quality
53.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-156
D2
high
residues 169-222
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015171__D7-59
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 57.0 | 3.66e-01 | 100.0% | 17.3% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.72 | 51.0 | 3.07e-01 | 100.0% | 11.5% |
| 3bs4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 56.0 | 3.64e-01 | 88.9% | 93.5% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.68 | 53.0 | 4.39e-01 | 100.0% | 46.6% |
| 6muwB00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.67 | 46.0 | 3.03e-01 | 72.2% | 60.3% |
| 8f66A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.64 | 45.0 | 3.03e-01 | 74.1% | 65.2% |
| 1g0uE00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.64 | 45.0 | 2.99e-01 | 74.1% | 58.7% |
| 7lxuE01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.64 | 46.0 | 3.06e-01 | 75.9% | 64.0% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 47.0 | 3.78e-01 | 94.4% | 41.0% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.62 | 54.0 | 3.42e-01 | 100.0% | 50.2% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 54.0 | 4.56e-01 | 100.0% | 95.6% |
| 1eotA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 42.0 | 3.85e-01 | 96.3% | 54.1% |
| 3c5vA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 43.0 | 2.73e-01 | 79.6% | 26.2% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 48.0 | 4.09e-01 | 92.6% | 54.3% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 50.0 | 4.00e-01 | 100.0% | 65.1% |
| 8cukB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 44.0 | 2.72e-01 | 85.2% | 88.9% |
| 5tdeA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 38.0 | 2.91e-01 | 87.0% | 26.2% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 40.0 | 3.02e-01 | 100.0% | 28.5% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.57 | 46.0 | 3.60e-01 | 96.3% | 100.0% |
| 2bz0A00 | 3.40.50.10990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II | 0.56 | 37.0 | 2.70e-01 | 74.1% | 22.0% |
| 2qg7B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 47.0 | 3.97e-01 | 100.0% | 65.3% |
| 1zs7A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.56 | 45.0 | 3.72e-01 | 94.4% | 48.1% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.56 | 45.0 | 3.94e-01 | 90.7% | 77.4% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 46.0 | 3.49e-01 | 98.1% | 80.7% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.55 | 44.0 | 3.41e-01 | 100.0% | 74.1% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.54 | 42.0 | 2.70e-01 | 92.6% | 96.5% |
| 1u2eA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 37.0 | 2.34e-01 | 72.2% | 26.6% |
| 2re3A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.53 | 43.0 | 4.07e-01 | 96.3% | 84.3% |
| 1ej6B00 | 3.90.1830.10 | Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 | 0.53 | 43.0 | 2.38e-01 | 98.1% | 85.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 45.0 | 3.58e-01 | 100.0% | 83.3% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.53 | 45.0 | 3.30e-01 | 100.0% | 87.3% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.53 | 45.0 | 3.58e-01 | 100.0% | 64.4% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 43.0 | 3.19e-01 | 90.7% | 68.8% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.52 | 40.0 | 3.86e-01 | 98.1% | 73.4% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 2.95e-01 | 94.4% | 82.3% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 32.0 | 3.36e-01 | 87.0% | 61.2% |
| 3ga7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 44.0 | 2.76e-01 | 100.0% | 27.9% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 2.68e-01 | 100.0% | 36.7% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 39.0 | 3.16e-01 | 98.1% | 41.2% |
| 1gmeA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.21e-01 | 100.0% | 42.0% |
| 7zr3A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 2.56e-01 | 92.6% | 26.5% |
| 8e9gD01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.50 | 44.0 | 2.63e-01 | 100.0% | 45.8% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3340222 | 3131.1.1.3 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRC | 0.77 | 44.0 | 3.34e-01 | 70.4% | 24.8% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 52.0 | 4.73e-01 | 87.0% | 54.3% |
| 4047862 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.75 | 43.0 | 3.66e-01 | 81.5% | 35.3% |
| 4933457 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.70 | 47.0 | 3.10e-01 | 70.4% | 60.5% |
| 4504493 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.69 | 40.0 | 3.47e-01 | 81.5% | 35.3% |
| 4999721 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.69 | 47.0 | 3.04e-01 | 72.2% | 55.6% |
| 4979383 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.68 | 46.0 | 3.07e-01 | 70.4% | 64.4% |
| 4948083 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.67 | 46.0 | 3.07e-01 | 70.4% | 65.4% |
| 4023842 | 210.1.1.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N | 0.66 | 46.0 | 2.94e-01 | 72.2% | 56.9% |
| 4018216 | 210.1.1.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N | 0.66 | 46.0 | 2.98e-01 | 72.2% | 60.0% |
| 3935966 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.66 | 43.0 | 2.77e-01 | 100.0% | 13.5% |
| 4928312 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.65 | 45.0 | 3.12e-01 | 74.1% | 68.7% |
| 3237008 | 2484.1.1.233 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 | 0.64 | 55.0 | 3.84e-01 | 100.0% | 31.3% |
| 4901024 | 1.2.1.0 ↗ | beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain | 0.62 | 45.0 | 3.29e-01 | 77.8% | 79.7% |
| 4191193 | 2003.1.2.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored, NAD_binding_8 | 0.62 | 53.0 | 3.49e-01 | 98.1% | 48.4% |
| 3295586 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.61 | 52.0 | 3.78e-01 | 100.0% | 33.9% |
| 3918252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 44.0 | 4.77e-01 | 88.9% | 100.0% |
| 3710891 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.60 | 49.0 | 4.10e-01 | 92.6% | 57.0% |
| 3839298 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.60 | 44.0 | 3.47e-01 | 100.0% | 37.4% |
| 4579655 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.60 | 52.0 | 3.10e-01 | 100.0% | 13.8% |
| 3970479 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.59 | 44.0 | 4.02e-01 | 92.6% | 60.0% |
| 3435674 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.59 | 46.0 | 3.36e-01 | 88.9% | 59.4% |
| 3702975 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.59 | 43.0 | 3.71e-01 | 100.0% | 46.8% |
| 5034252 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.58 | 47.0 | 3.73e-01 | 98.1% | 43.1% |
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.58 | 48.0 | 4.00e-01 | 90.7% | 79.8% |
| 4992060 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.58 | 51.0 | 3.56e-01 | 100.0% | 86.9% |
| 3776113 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.58 | 49.0 | 3.20e-01 | 100.0% | 61.2% |
| 160941 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.58 | 49.0 | 3.88e-01 | 98.1% | 47.1% |
| 3644493 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 49.0 | 2.97e-01 | 100.0% | 37.4% |
| 4359927 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.57 | 49.0 | 3.36e-01 | 98.1% | 70.3% |
| 3675954 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 48.0 | 3.29e-01 | 100.0% | 70.2% |
| 3482713 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 50.0 | 3.75e-01 | 100.0% | 67.4% |
| 4659931 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.57 | 48.0 | 2.97e-01 | 98.1% | 40.3% |
| 3591459 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.56 | 48.0 | 4.14e-01 | 98.1% | 62.4% |
| 3186255 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.56 | 43.0 | 2.72e-01 | 100.0% | 15.0% |
| 3700076 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.55 | 44.0 | 2.69e-01 | 100.0% | 42.1% |
| 4436049 | 1190.1.1.1 ↗ | a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF | 0.55 | 37.0 | 3.10e-01 | 72.2% | 52.0% |
| 3502095 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.54 | 46.0 | 3.30e-01 | 98.1% | 76.7% |
| 3789602 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 46.0 | 3.61e-01 | 100.0% | 60.8% |
| 5049640 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 45.0 | 4.07e-01 | 98.1% | 67.1% |
| 3929357 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 42.0 | 3.74e-01 | 100.0% | 59.5% |
| 4998349 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.52 | 45.0 | 3.03e-01 | 96.3% | 57.2% |
| 5047435 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 3.32e-01 | 100.0% | 91.0% |
| 5029254 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.52 | 45.0 | 3.01e-01 | 96.3% | 61.5% |
| 3308699 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.52 | 43.0 | 3.53e-01 | 100.0% | 79.1% |
| 4969909 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 45.0 | 3.27e-01 | 98.1% | 56.0% |
| 5029588 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.51 | 43.0 | 3.59e-01 | 98.1% | 70.0% |
| 4203006 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.51 | 44.0 | 3.53e-01 | 100.0% | 90.9% |
| 3479088 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.50 | 44.0 | 2.87e-01 | 96.3% | 52.9% |
| 3929135 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 44.0 | 3.57e-01 | 100.0% | 74.3% |
| 4027378 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.50 | 43.0 | 2.78e-01 | 96.3% | 46.3% |
| 3859971 | 223.1.1.108 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 | 0.50 | 38.0 | 2.29e-01 | 88.9% | 21.3% |