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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00234
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00234
Identity
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-144
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01668.24 best | SmpB | 169.2 | 7.30e-50 | 98.6% | 97.2% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p6vA00 | 2.40.280.10 | Mainly Beta › Beta Barrel › Small Protein B; Chain: A; › Small protein B | 0.96 | 79.0 | 8.52e-01 | 86.7% | 96.8% |
| 3u83A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 25.0 | 2.96e-01 | 77.6% | 50.5% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.60 | 27.0 | 3.78e-01 | 74.1% | 86.8% |
| 2zzeA04 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.60 | 26.0 | 3.15e-01 | 73.4% | 60.0% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.58 | 32.0 | 3.67e-01 | 76.2% | 71.4% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 24.0 | 3.22e-01 | 75.5% | 71.2% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 24.0 | 2.91e-01 | 74.1% | 57.6% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 24.0 | 2.86e-01 | 75.5% | 55.9% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 24.0 | 3.09e-01 | 75.5% | 66.3% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 24.0 | 2.95e-01 | 75.5% | 58.4% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 23.0 | 2.83e-01 | 75.5% | 57.8% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.54 | 38.0 | 3.42e-01 | 73.4% | 73.8% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.53 | 24.0 | 3.19e-01 | 75.5% | 76.2% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 25.0 | 2.95e-01 | 72.7% | 60.8% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.53 | 27.0 | 3.02e-01 | 75.5% | 60.2% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 38.0 | 3.48e-01 | 74.1% | 73.8% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 37.0 | 3.48e-01 | 74.1% | 77.8% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 27.0 | 2.75e-01 | 83.9% | 47.5% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 22.0 | 2.75e-01 | 76.2% | 64.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4597943 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.98 | 95.0 | 9.50e-01 | 100.0% | 97.9% |
| 4557109 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.98 | 96.0 | 9.56e-01 | 100.0% | 98.6% |
| 4093835 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.98 | 80.0 | 8.76e-01 | 83.9% | 99.2% |
| 4552630 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.98 | 83.0 | 8.95e-01 | 86.7% | 99.2% |
| 4601389 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.96 | 93.0 | 9.17e-01 | 99.3% | 98.0% |
| 2831758 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.91 | 86.0 | 8.43e-01 | 99.3% | 92.7% |
| 4503821 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.65 | 28.0 | 3.85e-01 | 76.9% | 80.0% |
| 4978302 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 31.0 | 3.07e-01 | 79.0% | 42.0% |
| 3697243 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.63 | 43.0 | 4.53e-01 | 78.3% | 75.4% |
| 3248470 | 3468.1.1.0 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain | 0.60 | 44.0 | 4.76e-01 | 75.5% | 91.7% |
| 3718671 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.60 | 31.0 | 2.54e-01 | 75.5% | 26.7% |
| 3881966 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.60 | 42.0 | 4.73e-01 | 83.2% | 95.5% |
| 3331686 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.59 | 30.0 | 3.71e-01 | 80.4% | 76.7% |
| 3604508 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.59 | 25.0 | 3.09e-01 | 76.2% | 58.9% |
| 4001734 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.58 | 32.0 | 3.53e-01 | 76.2% | 64.3% |
| 3619535 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.58 | 32.0 | 3.58e-01 | 77.6% | 66.4% |
| 3325200 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.57 | 43.0 | 4.57e-01 | 77.6% | 91.2% |
| 5023975 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.57 | 29.0 | 3.10e-01 | 79.7% | 54.4% |
| 1219773 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.56 | 24.0 | 2.85e-01 | 74.1% | 54.6% |
| 3990150 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.56 | 24.0 | 3.17e-01 | 79.7% | 72.0% |
| 3995251 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.55 | 24.0 | 3.02e-01 | 75.5% | 66.3% |
| 4966477 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.54 | 28.0 | 3.36e-01 | 78.3% | 73.7% |
| 5034455 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 37.0 | 2.92e-01 | 72.0% | 73.6% |
| 3303901 | 3468.1.1.0 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain | 0.52 | 42.0 | 4.07e-01 | 86.0% | 76.7% |
| 4364438 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.52 | 24.0 | 2.83e-01 | 74.1% | 61.7% |
| 4175825 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.52 | 25.0 | 3.31e-01 | 76.9% | 93.8% |
| 5039158 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.51 | 32.0 | 3.07e-01 | 74.8% | 55.0% |
| 4253448 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.51 | 23.0 | 2.78e-01 | 75.5% | 60.2% |
| 3972451 | 304.8.1.68 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF493 | 0.51 | 23.0 | 2.77e-01 | 75.5% | 60.2% |
| 2607848 | 304.134.1.1 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N | 0.50 | 23.0 | 2.91e-01 | 78.3% | 69.1% |