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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00254

Bact-Vir

LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00254

Identity

Kingdom:
phage

Quality

91.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-96
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.66 53.0 3.72e-01 86.8% 51.0%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 52.0 4.79e-01 97.1% 69.0%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 49.0 3.99e-01 83.8% 66.7%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.13e-01 85.3% 63.6%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.30e-01 85.3% 74.8%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.02e-01 85.3% 77.8%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 4.23e-01 83.8% 79.4%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.27e-01 85.3% 78.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.68e-01 92.6% 88.9%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.83e-01 80.9% 81.7%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.61 54.0 4.60e-01 100.0% 73.0%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.35e-01 85.3% 80.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.49e-01 80.9% 87.5%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.12e-01 85.3% 77.7%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 46.0 3.68e-01 91.2% 80.9%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.87e-01 85.3% 68.7%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.84e-01 92.6% 95.2%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.77e-01 89.7% 77.4%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 4.04e-01 83.8% 79.6%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.74e-01 83.8% 73.7%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.69e-01 85.3% 69.9%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.83e-01 80.9% 77.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.77e-01 86.8% 78.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.23e-01 88.2% 83.1%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 41.0 2.70e-01 80.9% 34.9%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.75e-01 85.3% 72.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.55 41.0 3.51e-01 83.8% 73.4%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.55 38.0 3.49e-01 98.5% 53.3%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.74e-01 88.2% 79.5%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 46.0 3.82e-01 100.0% 84.8%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 3.97e-01 92.6% 57.3%
4dgwC00 2.60.40.2690 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.09e-01 73.5% 65.2%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.20e-01 86.8% 96.4%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 43.0 3.06e-01 86.8% 49.3%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 43.0 4.49e-01 100.0% 100.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.63e-01 83.8% 81.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.22e-01 97.1% 85.7%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 41.0 3.69e-01 89.7% 74.5%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 37.0 2.56e-01 77.9% 33.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 36.0 3.93e-01 77.9% 100.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 3.90e-01 77.9% 88.7%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.52 39.0 3.54e-01 82.4% 81.1%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 40.0 3.02e-01 92.6% 98.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 44.0 3.92e-01 100.0% 81.7%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.67e-01 92.6% 79.2%
4ntwB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.51 32.0 3.47e-01 98.5% 74.6%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.48e-01 85.3% 61.9%
1bikA00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.50 33.0 2.81e-01 98.5% 39.1%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.50 40.0 2.62e-01 92.6% 67.8%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 39.0 2.73e-01 92.6% 83.7%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.50 32.0 3.52e-01 98.5% 79.6%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3472332 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.10e-01 82.4% 89.1%
4254437 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 56.0 5.16e-01 97.1% 71.8%
3732141 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 52.0 4.06e-01 83.8% 64.1%
3259098 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 52.0 4.24e-01 83.8% 65.8%
4337472 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.66 55.0 4.89e-01 97.1% 65.3%
4162129 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.65 47.0 3.11e-01 77.9% 63.4%
4019873 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 49.0 3.98e-01 83.8% 67.4%
3373330 4.1.1.337 beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.64 46.0 4.52e-01 94.1% 70.7%
3779393 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 50.0 4.00e-01 83.8% 60.0%
3743896 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.63 48.0 3.80e-01 83.8% 69.0%
3267508 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 4.25e-01 83.8% 74.0%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.68e-01 91.2% 83.1%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.64e-01 92.6% 73.5%
3766659 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 47.0 4.89e-01 94.1% 96.7%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.84e-01 88.2% 100.0%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.60 51.0 5.16e-01 98.5% 97.1%
4191831 220.1.1.217 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.60 47.0 3.15e-01 83.8% 30.9%
3182212 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 3.71e-01 85.3% 71.7%
3398310 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 3.98e-01 85.3% 75.7%
3823780 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.60 50.0 4.91e-01 97.1% 89.3%
3924975 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.60 51.0 4.91e-01 100.0% 83.7%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 49.0 4.75e-01 97.1% 85.3%
3508680 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.94e-01 83.8% 73.3%
162409 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 3.87e-01 85.3% 68.7%
5036802 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.59 44.0 3.54e-01 95.6% 40.0%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.35e-01 100.0% 67.4%
3860858 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.81e-01 83.8% 66.1%
4438983 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 45.0 4.09e-01 100.0% 61.1%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.47e-01 97.1% 76.7%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 48.0 4.49e-01 97.1% 80.0%
4198892 1.1.7.14 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.58 51.0 4.14e-01 100.0% 96.9%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 49.0 4.80e-01 100.0% 89.3%
3702177 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.42e-01 98.5% 93.0%
3997949 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 44.0 4.13e-01 100.0% 65.6%
3622425 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 43.0 3.68e-01 92.6% 47.5%
5052205 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 50.0 2.91e-01 100.0% 88.2%
3880913 59.1.3.2 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_polI_A34 0.57 40.0 3.36e-01 73.5% 57.0%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.70e-01 95.6% 96.9%
4117582 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.57 49.0 4.10e-01 100.0% 70.4%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.71e-01 95.6% 98.4%
3251940 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.56 44.0 4.32e-01 95.6% 81.3%
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 44.0 3.94e-01 100.0% 60.0%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.43e-01 100.0% 82.7%
3756645 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.48e-01 83.8% 70.0%
4979936 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.56 40.0 2.80e-01 76.5% 88.3%
4565130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.15e-01 100.0% 67.4%
3926175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.06e-01 94.1% 70.6%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.55 47.0 3.72e-01 100.0% 72.3%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.43e-01 98.5% 91.8%
3448215 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.55 45.0 4.47e-01 98.5% 97.3%
5002629 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.55 45.0 3.61e-01 97.1% 45.0%
None 0.54 41.0 2.66e-01 80.9% 33.1%
3995582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.16e-01 100.0% 82.0%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.53 41.0 3.16e-01 88.2% 33.3%
3931783 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.53 44.0 4.09e-01 100.0% 95.8%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.53 42.0 4.16e-01 95.6% 88.0%
4246480 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 42.0 3.84e-01 91.2% 76.8%
4448933 12.1.1.15 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › BetaGal_dom2 0.52 35.0 3.29e-01 72.1% 93.3%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.51 43.0 3.81e-01 100.0% 64.5%
3905549 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 42.0 3.71e-01 100.0% 61.0%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.51 40.0 3.67e-01 92.6% 63.0%
3231925 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.92e-01 100.0% 85.0%
4466471 281.1.1.1 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.51 42.0 3.12e-01 100.0% 43.6%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 38.0 3.97e-01 91.2% 100.0%
3876442 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.50 37.0 2.80e-01 82.4% 32.6%
3393142 5.1.3.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.50 38.0 2.42e-01 83.8% 33.8%