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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00258
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00258
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-79
Domain cluster:
rep: 04302015_21_scaffold_6_prodigal-single.1__X__X__00010__D12-100
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.64 | 49.0 | 3.77e-01 | 81.1% | 78.5% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.63 | 46.0 | 3.63e-01 | 77.0% | 79.2% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.61 | 37.0 | 3.71e-01 | 77.0% | 59.0% |
| 5vakA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 44.0 | 2.77e-01 | 83.8% | 44.2% |
| 7po9A01 | 3.40.1800.20 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › | 0.56 | 43.0 | 4.08e-01 | 91.9% | 70.9% |
| 1egdA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 49.0 | 3.91e-01 | 97.3% | 88.7% |
| 2jbrA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 49.0 | 3.63e-01 | 100.0% | 40.0% |
| 5iduC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 48.0 | 3.73e-01 | 100.0% | 78.6% |
| 5gj7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 45.0 | 3.59e-01 | 100.0% | 46.4% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.53 | 29.0 | 2.75e-01 | 79.7% | 42.9% |
| 2pg0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 47.0 | 3.70e-01 | 100.0% | 78.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3707770 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.75 | 43.0 | 4.47e-01 | 79.7% | 61.4% |
| 3472661 | 171.1.1.5 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase | 0.65 | 48.0 | 3.63e-01 | 77.0% | 97.1% |
| 5050345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 51.0 | 4.75e-01 | 100.0% | 69.5% |
| 3411902 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.60 | 52.0 | 3.58e-01 | 95.9% | 53.6% |
| 5010902 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.60 | 45.0 | 3.71e-01 | 94.6% | 45.4% |
| 3409141 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.59 | 44.0 | 3.72e-01 | 77.0% | 82.6% |
| 5050887 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 47.0 | 3.76e-01 | 90.5% | 88.0% |
| 4674797 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.57 | 39.0 | 3.09e-01 | 82.4% | 35.3% |
| 3451546 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.56 | 50.0 | 3.84e-01 | 95.9% | 78.1% |
| 4004083 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 38.0 | 3.37e-01 | 70.3% | 90.3% |
| 4175259 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.56 | 39.0 | 2.99e-01 | 73.0% | 43.5% |
| 3198004 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.56 | 43.0 | 3.95e-01 | 85.1% | 88.0% |
| 3992612 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.55 | 36.0 | 3.49e-01 | 93.2% | 56.7% |
| 3233240 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 48.0 | 3.31e-01 | 100.0% | 49.5% |
| 3286126 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.54 | 48.0 | 3.71e-01 | 98.6% | 80.0% |
| 3957185 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.53 | 48.0 | 3.73e-01 | 100.0% | 75.5% |
| 3277148 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.53 | 39.0 | 3.13e-01 | 78.4% | 44.1% |
| 3517305 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.52 | 41.0 | 3.79e-01 | 85.1% | 83.2% |
| 3728790 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.50 | 44.0 | 3.28e-01 | 100.0% | 70.8% |