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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00278
Bact-VirLacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00278
Identity
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-93
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.58 | 34.0 | 3.40e-01 | 94.3% | 55.6% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 34.0 | 4.17e-01 | 73.9% | 96.4% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 36.0 | 3.67e-01 | 92.0% | 64.7% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 36.0 | 3.49e-01 | 93.2% | 57.6% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 33.0 | 3.65e-01 | 93.2% | 75.4% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 39.0 | 3.80e-01 | 92.0% | 66.7% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 34.0 | 4.04e-01 | 88.6% | 100.0% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 37.0 | 4.26e-01 | 85.2% | 100.0% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 36.0 | 3.94e-01 | 93.2% | 83.6% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 34.0 | 3.45e-01 | 93.2% | 63.6% |
| 2mngA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 37.0 | 3.27e-01 | 93.2% | 48.1% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 39.0 | 3.65e-01 | 92.0% | 61.7% |
| 2greF02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 37.0 | 3.94e-01 | 93.2% | 82.1% |
| 3kl9A02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.53 | 37.0 | 3.96e-01 | 93.2% | 85.1% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 4.14e-01 | 93.2% | 95.6% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.53 | 40.0 | 4.36e-01 | 93.2% | 98.6% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 4.01e-01 | 100.0% | 93.9% |
| 2zuoA09 | 2.30.30.570 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 27.0 | 3.08e-01 | 93.2% | 63.5% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 31.0 | 3.52e-01 | 85.2% | 80.3% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 33.0 | 3.67e-01 | 80.7% | 85.3% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.50 | 37.0 | 3.83e-01 | 94.3% | 82.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 32.0 | 3.67e-01 | 86.4% | 91.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4321108 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.61 | 38.0 | 4.49e-01 | 93.2% | 100.0% |
| 3738947 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.59 | 35.0 | 3.49e-01 | 78.4% | 55.8% |
| 4991109 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.58 | 38.0 | 4.55e-01 | 83.0% | 100.0% |
| 3578824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 36.0 | 3.58e-01 | 92.0% | 62.2% |
| 140210 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 33.0 | 3.65e-01 | 93.2% | 75.4% |
| 4580772 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.54 | 35.0 | 3.61e-01 | 90.9% | 68.2% |
| 1030895 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.54 | 39.0 | 4.42e-01 | 92.0% | 100.0% |
| 4055256 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.53 | 35.0 | 3.47e-01 | 90.9% | 64.4% |
| 4946447 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 45.0 | 4.53e-01 | 93.2% | 96.7% |
| 3877478 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.50 | 32.0 | 3.13e-01 | 90.9% | 57.0% |
| 4350337 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.50 | 38.0 | 4.09e-01 | 90.9% | 94.7% |
| 3502158 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.50 | 44.0 | 3.72e-01 | 100.0% | 69.0% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.50 | 35.0 | 3.71e-01 | 93.2% | 81.2% |