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LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00279

Bact-Vir

LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00279

Identity

Kingdom:
phage

Quality

79.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-121
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 44.0 4.98e-01 88.3% 71.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 45.0 5.27e-01 92.6% 78.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 42.0 4.71e-01 87.2% 67.1%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 41.0 5.27e-01 85.1% 87.5%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 41.0 5.43e-01 79.8% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 41.0 4.87e-01 87.2% 76.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 41.0 5.44e-01 90.4% 100.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 42.0 5.44e-01 90.4% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 43.0 4.91e-01 91.5% 76.1%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 45.0 5.46e-01 87.2% 91.9%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 40.0 5.09e-01 89.4% 89.3%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 41.0 5.32e-01 86.2% 100.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 38.0 5.02e-01 85.1% 95.9%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 42.0 5.31e-01 89.4% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 5.00e-01 90.4% 83.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 40.0 4.95e-01 86.2% 88.1%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.95e-01 86.2% 85.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 4.95e-01 90.4% 82.4%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 5.37e-01 89.4% 98.2%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 40.0 3.92e-01 86.2% 51.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 39.0 4.81e-01 87.2% 85.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 39.0 4.20e-01 87.2% 63.7%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.99e-01 91.5% 94.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 5.11e-01 94.7% 95.2%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 37.0 4.63e-01 91.5% 89.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 38.0 4.74e-01 90.4% 98.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 39.0 4.75e-01 90.4% 91.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 41.0 4.66e-01 91.5% 88.1%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 38.0 4.43e-01 87.2% 88.7%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.63 41.0 3.92e-01 90.4% 57.8%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 4.18e-01 72.3% 97.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.62 36.0 3.55e-01 93.6% 52.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.61 40.0 4.04e-01 90.4% 66.3%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.36e-01 84.0% 73.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.60e-01 95.7% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.19e-01 94.7% 78.3%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 4.12e-01 98.9% 75.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 41.0 3.21e-01 77.7% 81.3%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 38.0 3.44e-01 71.3% 90.8%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 40.0 2.84e-01 78.7% 89.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.34e-01 94.7% 94.0%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.52 39.0 3.18e-01 83.0% 100.0%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 44.0 4.64e-01 89.4% 57.6%
3881119 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 44.0 4.77e-01 86.2% 61.3%
3389169 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 43.0 4.60e-01 87.2% 57.6%
3877485 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 43.0 4.50e-01 87.2% 56.5%
3228278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 42.0 5.04e-01 86.2% 73.8%
3616243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 42.0 5.39e-01 86.2% 87.3%
3830187 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 42.0 5.42e-01 86.2% 89.1%
3547084 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 43.0 4.42e-01 87.2% 55.6%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.79 44.0 5.23e-01 89.4% 80.0%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 43.0 5.46e-01 89.4% 90.9%
3518844 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 43.0 4.50e-01 88.3% 58.8%
4580772 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 42.0 4.48e-01 86.2% 58.8%
3218198 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 41.0 5.22e-01 86.2% 87.3%
3535278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 42.0 5.20e-01 87.2% 83.3%
3299797 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.78 42.0 5.15e-01 88.3% 83.3%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 42.0 4.38e-01 88.3% 56.7%
3330943 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.78 42.0 5.43e-01 89.4% 92.7%
145285 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.77 43.0 5.11e-01 87.2% 80.3%
3294392 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 43.0 4.51e-01 89.4% 61.2%
4317035 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 41.0 4.37e-01 87.2% 58.8%
3517728 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 41.0 4.72e-01 87.2% 71.4%
3765289 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 42.0 4.34e-01 88.3% 56.7%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.76 41.0 5.04e-01 90.4% 83.3%
3673317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 43.0 5.43e-01 88.3% 96.4%
3920666 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 42.0 4.30e-01 88.3% 56.7%
3840679 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 42.0 4.20e-01 88.3% 53.7%
3620905 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 43.0 4.42e-01 87.2% 58.9%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 43.0 3.67e-01 88.3% 36.6%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 43.0 5.06e-01 90.4% 81.5%
3913334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 41.0 4.75e-01 85.1% 72.9%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 42.0 4.47e-01 88.3% 62.4%
164934 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.75 43.0 4.91e-01 91.5% 76.1%
3229601 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 42.0 5.22e-01 90.4% 88.3%
3938389 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 42.0 4.42e-01 87.2% 61.2%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 41.0 4.25e-01 88.3% 56.7%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.74 42.0 5.18e-01 90.4% 88.3%
5037849 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 47.0 4.23e-01 90.4% 48.0%
3649741 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 39.0 4.32e-01 87.2% 64.0%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 42.0 5.36e-01 90.4% 96.4%
3881124 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 41.0 4.26e-01 86.2% 57.8%
5006274 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 44.0 3.79e-01 90.4% 40.0%
3329059 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.73 40.0 5.18e-01 81.9% 100.0%
3765274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 42.0 4.36e-01 88.3% 60.0%
3617111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 39.0 4.04e-01 86.2% 54.4%
4026957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 42.0 5.14e-01 88.3% 90.0%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.72 41.0 4.59e-01 88.3% 70.7%
3547106 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 42.0 4.31e-01 87.2% 60.0%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.72 37.0 3.79e-01 89.4% 52.2%
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.72e-01 90.4% 72.5%
3834303 109.4.1.257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.71 42.0 2.64e-01 90.4% 12.1%
3541241 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.71 42.0 5.03e-01 91.5% 91.7%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 40.0 4.65e-01 86.2% 80.0%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.70 41.0 4.65e-01 88.3% 77.1%
4936291 4.1.1.487 beta barrels › SH3 › SH3 › SH3 › DUF7205 0.69 40.0 4.65e-01 86.2% 81.5%
3037102 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.90e-01 89.4% 88.7%
4559371 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.89e-01 87.2% 88.9%
4357819 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.69 45.0 5.13e-01 89.4% 88.6%
3492982 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 50.0 4.40e-01 75.5% 87.4%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.69 43.0 4.62e-01 90.4% 73.8%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 40.0 4.24e-01 88.3% 64.7%
3936468 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 41.0 4.09e-01 89.4% 57.0%
4629022 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.66 43.0 4.85e-01 90.4% 88.6%
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.66 40.0 4.34e-01 87.2% 72.5%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.65 41.0 4.61e-01 83.0% 81.3%
4011604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 43.0 4.73e-01 90.4% 85.3%
3999723 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.00e-01 78.7% 67.3%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.97e-01 91.5% 100.0%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 44.0 3.84e-01 94.7% 51.1%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.62 45.0 4.17e-01 98.9% 61.7%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.61 42.0 4.65e-01 97.9% 89.3%
3824346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.47e-01 98.9% 82.5%
4025326 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.51e-01 90.4% 88.6%
4958339 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 44.0 4.14e-01 94.7% 64.5%
3423337 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.60 41.0 4.40e-01 98.9% 82.5%
3492757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.74e-01 88.3% 97.1%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.26e-01 85.1% 92.5%
3833030 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.57 41.0 3.61e-01 94.7% 52.6%
4942673 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.56 45.0 4.29e-01 86.2% 84.5%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.55 41.0 4.30e-01 88.3% 87.1%
1408049 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.54 42.0 3.72e-01 88.3% 57.4%