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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00021
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00021
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-71
Domain cluster:
rep: IMGVR_UViG_3300038321_000129-3300038321-Ga0134857_001033_2009_2413__D7-70
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.79 | 67.0 | 5.78e-01 | 100.0% | 60.0% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.69 | 61.0 | 5.69e-01 | 100.0% | 100.0% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.67 | 56.0 | 5.37e-01 | 98.3% | 100.0% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.67 | 59.0 | 5.58e-01 | 100.0% | 93.1% |
| 4nfwF00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.64 | 43.0 | 3.23e-01 | 70.0% | 69.3% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.60 | 47.0 | 3.42e-01 | 91.7% | 45.1% |
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.59 | 51.0 | 3.87e-01 | 98.3% | 68.5% |
| 1qfjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 39.0 | 3.52e-01 | 100.0% | 51.6% |
| 1nnxA00 | 2.40.50.200 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold | 0.52 | 38.0 | 3.41e-01 | 83.3% | 80.6% |
| 7ekdA01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.52 | 37.0 | 2.45e-01 | 81.7% | 81.2% |
| 2f4mA01 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.51 | 35.0 | 2.45e-01 | 73.3% | 64.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024766 | 7550.1.1.5 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF7839 | 0.83 | 63.0 | 4.57e-01 | 90.0% | 30.6% |
| 4930420 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.82 | 68.0 | 6.45e-01 | 100.0% | 77.1% |
| 5007190 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.82 | 63.0 | 6.85e-01 | 96.7% | 98.0% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 67.0 | 6.38e-01 | 100.0% | 77.1% |
| 4963571 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 66.0 | 6.50e-01 | 100.0% | 83.1% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 63.0 | 6.58e-01 | 96.7% | 92.7% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.79 | 66.0 | 6.84e-01 | 100.0% | 98.2% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 64.0 | 6.68e-01 | 100.0% | 98.2% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 67.0 | 5.28e-01 | 98.3% | 48.3% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.77 | 66.0 | 6.64e-01 | 100.0% | 95.0% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 69.0 | 6.70e-01 | 98.3% | 92.3% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 67.0 | 5.10e-01 | 100.0% | 42.9% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.72 | 61.0 | 6.10e-01 | 100.0% | 95.0% |
| 5025019 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.71 | 63.0 | 5.65e-01 | 100.0% | 89.3% |
| 3227803 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.71 | 61.0 | 6.03e-01 | 98.3% | 100.0% |
| 4950136 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.70 | 59.0 | 5.56e-01 | 95.0% | 94.7% |
| 4991571 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.70 | 62.0 | 5.63e-01 | 100.0% | 93.8% |
| 4956897 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.70 | 62.0 | 5.68e-01 | 100.0% | 93.8% |
| 4990371 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.69 | 60.0 | 5.79e-01 | 100.0% | 97.1% |
| 4938684 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 60.0 | 5.39e-01 | 100.0% | 90.6% |
| 4948446 | 7541.1.1.2 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoeA_C | 0.69 | 61.0 | 3.97e-01 | 100.0% | 28.8% |
| 4983299 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 61.0 | 5.42e-01 | 100.0% | 85.9% |
| 3923131 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 59.0 | 5.43e-01 | 98.3% | 97.5% |
| 5049869 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 60.0 | 5.50e-01 | 100.0% | 95.0% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 60.0 | 5.53e-01 | 100.0% | 92.3% |
| 5011090 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 58.0 | 5.42e-01 | 96.7% | 93.3% |
| 3398750 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.68 | 59.0 | 5.42e-01 | 100.0% | 95.0% |
| 3516152 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.67 | 59.0 | 5.27e-01 | 100.0% | 92.9% |
| 3385835 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.67 | 58.0 | 5.37e-01 | 100.0% | 95.0% |
| 4949209 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.67 | 58.0 | 4.02e-01 | 100.0% | 35.2% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.64 | 51.0 | 4.92e-01 | 91.7% | 92.8% |
| 4578066 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.61 | 47.0 | 3.34e-01 | 88.3% | 40.0% |
| 4392353 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.54 | 37.0 | 3.26e-01 | 73.3% | 68.4% |
| 2604956 | 6073.1.1.2 ↗ | beta barrels › MMP1218-like › MMP1218-like › MMP1218-like › ArgZ-like_C_1st | 0.54 | 44.0 | 4.01e-01 | 96.7% | 90.8% |
| 4986981 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.51 | 39.0 | 2.75e-01 | 88.3% | 64.9% |
D2
high
residues 77-128
Domain cluster:
rep: BML_08182015_6_5m_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00004__D508-560
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.69 | 60.0 | 4.97e-01 | 100.0% | 58.9% |
| 2yuwA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.25e-01 | 76.9% | 54.1% |
| 1kk1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 39.0 | 2.77e-01 | 82.7% | 86.7% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.25e-01 | 78.8% | 68.4% |
| 1h3zA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 2.79e-01 | 71.2% | 84.3% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.51 | 42.0 | 3.11e-01 | 100.0% | 45.5% |
| 2ja2A02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.51 | 35.0 | 2.86e-01 | 76.9% | 68.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 65.0 | 6.10e-01 | 98.1% | 96.9% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 65.0 | 4.69e-01 | 100.0% | 42.1% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.68 | 59.0 | 5.65e-01 | 100.0% | 95.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.68 | 58.0 | 5.62e-01 | 100.0% | 93.3% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.68 | 60.0 | 4.54e-01 | 100.0% | 47.5% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.67 | 58.0 | 5.22e-01 | 100.0% | 93.3% |
| 4942509 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.56 | 39.0 | 3.35e-01 | 75.0% | 70.0% |
| 5075574 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.56 | 46.0 | 4.11e-01 | 100.0% | 90.0% |
| 5032007 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.54 | 38.0 | 3.09e-01 | 75.0% | 60.0% |
| 4946420 | 376.1.1.180 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII | 0.54 | 43.0 | 4.16e-01 | 98.1% | 98.5% |
| 5050748 | 375.1.1.204 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central | 0.53 | 35.0 | 2.96e-01 | 71.2% | 60.8% |
| 5022501 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.52 | 41.0 | 3.92e-01 | 100.0% | 84.3% |
| 4936891 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 34.0 | 2.98e-01 | 75.0% | 45.0% |