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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00075
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-88
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hs5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 36.0 | 3.69e-01 | 92.5% | 55.2% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.59 | 44.0 | 3.34e-01 | 82.1% | 89.6% |
| 7akwA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 43.0 | 3.10e-01 | 85.1% | 93.2% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 42.0 | 3.83e-01 | 83.6% | 88.7% |
| 4logB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 45.0 | 3.28e-01 | 100.0% | 64.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3473592 | 605.1.1.244 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › XK-related | 0.63 | 53.0 | 4.83e-01 | 95.5% | 96.7% |
| 3971374 | 101.1.2.233 ↗ | alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH | 0.62 | 35.0 | 3.62e-01 | 94.0% | 55.4% |
| 5045524 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.62 | 34.0 | 3.58e-01 | 97.0% | 60.0% |
| 4050314 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.59 | 43.0 | 4.19e-01 | 83.6% | 93.8% |
| 3883405 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.58 | 49.0 | 3.66e-01 | 100.0% | 89.2% |
| 3600867 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.56 | 38.0 | 3.50e-01 | 73.1% | 53.3% |
| 3598386 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.54 | 42.0 | 3.56e-01 | 95.5% | 77.8% |
| 1395462 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.52 | 36.0 | 3.05e-01 | 73.1% | 57.3% |
| 3698741 | 212.1.1.6 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9 | 0.51 | 40.0 | 2.58e-01 | 86.6% | 20.8% |