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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00126
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00126
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-180
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w7wA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 41.0 | 3.18e-01 | 70.3% | 97.8% |
| 2vqmA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.58 | 48.0 | 3.51e-01 | 90.6% | 64.7% |
| 4lk5A00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 38.0 | 3.19e-01 | 70.3% | 92.5% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 33.0 | 3.95e-01 | 93.5% | 92.3% |
| 1x9nA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.53 | 41.0 | 3.27e-01 | 80.4% | 67.6% |
| 3rrvC00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 36.0 | 2.99e-01 | 72.5% | 92.0% |
| 3rpcA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 38.0 | 3.16e-01 | 80.4% | 74.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945305 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.65 | 37.0 | 4.45e-01 | 95.7% | 88.2% |
| 2647825 | 2496.1.1.5 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS_2 | 0.62 | 34.0 | 3.88e-01 | 84.8% | 69.6% |
| 1683740 | 3988.1.1.1 ↗ | a/b three-layered sandwiches › Type III R-M system modification subunit C-terminal domain › Type III R-M system modification subunit C-terminal domain › Type III R-M system modification subunit C-terminal domain › T3RM_EcoP15I_C | 0.59 | 43.0 | 4.62e-01 | 97.8% | 88.1% |
| 4890930 | 148.1.3.397 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Dynein_C | 0.57 | 42.0 | 3.80e-01 | 97.8% | 55.6% |
| 3423643 | 246.3.1.2 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › RNase_E_G | 0.54 | 38.0 | 4.00e-01 | 85.5% | 79.2% |
| 141372 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.54 | 33.0 | 3.94e-01 | 93.5% | 92.3% |
| 5025578 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 48.0 | 3.55e-01 | 99.3% | 72.2% |
D2
medium
residues 181-235
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 45.0 | 3.84e-01 | 76.4% | 59.1% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 46.0 | 4.58e-01 | 87.3% | 85.7% |
| 2m4gA00 | 6.10.20.70 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.55 | 40.0 | 3.70e-01 | 80.0% | 60.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3652011 | 109.4.1.184 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1 | 0.66 | 44.0 | 3.35e-01 | 70.9% | 70.4% |
| 3725567 | 101.1.1.333 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ATG29_N | 0.64 | 46.0 | 4.09e-01 | 87.3% | 53.2% |
| 3479007 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.35e-01 | 96.4% | 29.7% |