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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00176

Bact-Vir

LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00176

Identity

Kingdom:
phage

Quality

61.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-97
PDB
D2 medium residues 187-238
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.71 52.0 4.07e-01 76.9% 59.3%
4ccjA02 1.10.10.1500 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › JmjC domain-containing ribosomal oxygenase (ROX), dimer domain 0.64 44.0 4.13e-01 76.9% 59.4%
4nuuB02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 48.0 3.65e-01 92.3% 35.8%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.61 43.0 3.04e-01 75.0% 56.8%
4nx8B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 52.0 3.31e-01 98.1% 91.5%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.60 45.0 3.98e-01 94.2% 55.4%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.14e-01 86.5% 25.4%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 42.0 3.71e-01 78.8% 54.1%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 45.0 4.20e-01 86.5% 71.0%
2qmqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 2.89e-01 92.3% 70.5%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.52 43.0 3.57e-01 92.3% 74.7%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.51 34.0 3.67e-01 71.2% 82.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3530945 109.4.1.1943 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103, PF26106 0.68 49.0 2.72e-01 76.9% 9.4%
4876930 3084.1.1.1 ↗ a+b two layers › C-terminal domain of nonstructural protein nsp4 › C-terminal domain of nonstructural protein nsp4 › C-terminal domain of nonstructural protein nsp4 › CoV_NSP4_C 0.66 48.0 3.98e-01 94.2% 44.4%
3724450 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.61 44.0 2.59e-01 76.9% 19.8%
4380333 150.1.2.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4 0.61 47.0 3.08e-01 86.5% 41.2%
4620511 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 50.0 3.62e-01 92.3% 36.7%
2388890 3576.1.1.0 ↗ a+b complex topology › Cas8-like › Cascade subunit CasA/Cse1/Cas8 › Cascade subunit CasA/Cse1/Cas8 0.60 48.0 2.73e-01 86.5% 21.5%
3479007 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.47e-01 96.2% 78.4%
3264036 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.53 39.0 3.25e-01 82.7% 75.2%
4960617 283.2.1.20 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › DUF7261 0.51 40.0 3.26e-01 94.2% 60.0%