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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00180

Bact-Vir

LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00180

Identity

Kingdom:
phage

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-63
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 57.0 5.38e-01 100.0% 60.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 52.0 4.84e-01 100.0% 53.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 5.18e-01 100.0% 61.3%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.80 47.0 2.77e-01 100.0% 7.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 52.0 4.88e-01 100.0% 57.6%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 54.0 4.18e-01 100.0% 35.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 52.0 4.93e-01 100.0% 60.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 4.81e-01 100.0% 56.5%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 4.01e-01 100.0% 35.9%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.73 45.0 3.49e-01 94.4% 28.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 3.79e-01 100.0% 41.0%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 51.0 4.14e-01 100.0% 43.7%
2f4mA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 46.0 4.76e-01 100.0% 80.0%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 41.0 2.80e-01 100.0% 18.0%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.63 42.0 4.30e-01 98.1% 72.5%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.62 49.0 3.57e-01 100.0% 31.2%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 51.0 3.85e-01 96.3% 96.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 43.0 3.27e-01 94.4% 28.9%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.61 42.0 3.22e-01 100.0% 30.5%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 42.0 3.44e-01 94.4% 38.2%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.60 51.0 3.98e-01 100.0% 42.5%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.60 40.0 3.28e-01 70.4% 65.7%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 54.0 4.04e-01 98.1% 57.6%
1rypC00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 50.0 3.28e-01 96.3% 79.9%
2b7yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 3.51e-01 98.1% 65.7%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 50.0 4.25e-01 98.1% 68.1%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.59 45.0 3.45e-01 100.0% 34.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 49.0 3.94e-01 96.3% 72.3%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 48.0 3.54e-01 100.0% 53.5%
3rleA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 49.0 3.82e-01 100.0% 47.1%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 48.0 3.89e-01 98.1% 72.1%
4edjA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 46.0 3.73e-01 100.0% 48.0%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 46.0 3.43e-01 100.0% 57.1%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 44.0 3.35e-01 100.0% 55.5%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 43.0 3.21e-01 100.0% 55.1%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 47.0 3.42e-01 100.0% 93.4%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.68e-01 94.4% 56.5%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 42.0 3.07e-01 100.0% 87.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 38.0 2.75e-01 100.0% 25.9%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.52 46.0 3.36e-01 100.0% 57.9%
5llyA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 40.0 2.91e-01 92.6% 38.4%
2qybA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 42.0 3.20e-01 100.0% 60.3%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.49e-01 92.6% 40.5%
2cnqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 3.17e-01 98.1% 87.4%
3ednA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 44.0 3.17e-01 100.0% 73.2%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 43.0 3.23e-01 94.4% 44.4%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.43e-01 90.7% 30.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 37.0 3.84e-01 100.0% 89.6%
2kcdA00 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.51 42.0 3.38e-01 100.0% 55.0%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 39.0 3.27e-01 96.3% 66.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4135259 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 57.0 5.31e-01 100.0% 56.9%
4213539 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.86 58.0 5.40e-01 100.0% 58.5%
3590827 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.85 56.0 5.27e-01 100.0% 56.9%
3221229 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 53.0 5.82e-01 100.0% 82.2%
5004672 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.78 54.0 4.08e-01 100.0% 32.5%
4990492 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 49.0 5.13e-01 100.0% 76.0%
3228385 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.69 42.0 2.39e-01 92.6% 5.3%
3496242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 44.0 4.52e-01 88.9% 70.0%
3325228 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.64 53.0 4.49e-01 96.3% 97.9%
3255739 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.64 51.0 4.77e-01 100.0% 70.0%
4935901 2.1.1.382 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 0.63 51.0 4.42e-01 92.6% 87.6%
3824181 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.63 47.0 4.62e-01 94.4% 73.3%
4081797 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.63 38.0 2.80e-01 100.0% 21.4%
3933012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 42.0 2.45e-01 98.1% 7.2%
3407467 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 45.0 3.25e-01 81.5% 89.4%
3492546 3698.1.1.0 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain 0.61 50.0 3.49e-01 98.1% 50.5%
3607708 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.61 55.0 3.72e-01 100.0% 29.4%
4842604 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.61 48.0 4.03e-01 100.0% 50.0%
3704152 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.60 49.0 4.17e-01 100.0% 56.0%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 45.0 3.51e-01 100.0% 35.2%
3782147 2008.1.1.79 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 0.60 48.0 2.97e-01 94.4% 71.7%
4948066 3781.1.1.2 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11 0.60 50.0 4.67e-01 98.1% 98.6%
3935168 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 41.0 2.65e-01 98.1% 14.5%
3472467 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 47.0 4.24e-01 100.0% 64.0%
5066490 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.59 49.0 4.23e-01 96.3% 75.6%
3316240 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.59 54.0 3.70e-01 100.0% 31.8%
4950105 312.1.1.0 a+b three layers › HIT-like › HIT-related › HIT-related 0.59 40.0 2.92e-01 74.1% 26.3%
5068234 259.1.1.0 a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain 0.58 48.0 4.13e-01 94.4% 98.9%
3266046 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.58 42.0 4.12e-01 100.0% 70.0%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.58 39.0 3.41e-01 98.1% 43.5%
4980167 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 45.0 3.07e-01 98.1% 96.9%
4029830 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 46.0 3.44e-01 96.3% 53.5%
3194226 12.6.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C 0.56 35.0 3.63e-01 94.4% 66.0%
5079075 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.56 44.0 3.09e-01 94.4% 26.9%
3416462 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.56 35.0 3.71e-01 94.4% 71.1%
3576534 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.56 42.0 3.03e-01 85.2% 98.9%
5072384 325.1.2.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE › MoaE 0.56 51.0 3.62e-01 100.0% 68.0%
1095153 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 42.0 2.60e-01 88.9% 16.8%
3476615 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.13e-01 98.1% 63.7%
4999321 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 3.86e-01 100.0% 74.3%
4212763 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.55 46.0 3.90e-01 100.0% 57.6%
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 37.0 3.39e-01 96.3% 50.0%
3473280 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.20e-01 88.9% 88.9%
4410522 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.54 44.0 3.28e-01 100.0% 57.0%
3611538 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 45.0 4.56e-01 100.0% 89.1%
3305240 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.53 45.0 3.23e-01 98.1% 52.0%
3514218 206.1.3.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.53 39.0 2.74e-01 87.0% 68.4%
3391411 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 4.00e-01 100.0% 97.5%
3876835 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.52 35.0 2.69e-01 72.2% 47.7%
None 0.51 44.0 2.75e-01 100.0% 58.2%
4565519 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.51 35.0 2.65e-01 72.2% 49.2%
3566799 11.1.1.537 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sp38 0.50 44.0 3.54e-01 98.1% 63.8%