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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00199
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00199
Identity
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 28-174
Domain cluster:
representative
CATH (2)
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277157 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 32.0 | 4.14e-01 | 89.8% | 90.7% |
| 3398675 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.58 | 35.0 | 3.88e-01 | 93.2% | 74.8% |
| 4930839 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 38.0 | 4.30e-01 | 100.0% | 91.8% |
| 2855394 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.56 | 32.0 | 3.44e-01 | 91.2% | 63.6% |
| 3498166 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 37.0 | 4.39e-01 | 98.0% | 100.0% |
| 1146574 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 32.0 | 3.67e-01 | 90.5% | 75.9% |
| 5043080 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 38.0 | 4.32e-01 | 96.6% | 97.3% |
| 4572291 | 10.32.1.40 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD2 | 0.51 | 37.0 | 3.45e-01 | 91.2% | 59.5% |
| 5041180 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 37.0 | 3.91e-01 | 93.2% | 83.8% |
| 5035871 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.50 | 30.0 | 3.57e-01 | 98.0% | 89.5% |
D2
medium
residues 175-261
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gp9A00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.60 | 49.0 | 4.35e-01 | 92.0% | 84.2% |
| 4nehA05 | 2.60.40.1530 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 | 0.57 | 50.0 | 4.00e-01 | 100.0% | 50.6% |
| 2hhpA03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.54 | 43.0 | 3.68e-01 | 88.5% | 76.2% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.54 | 43.0 | 3.58e-01 | 89.7% | 89.6% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 42.0 | 4.17e-01 | 94.3% | 81.1% |
| 3dliA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 38.0 | 2.90e-01 | 78.2% | 85.5% |
| 3h96C00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 36.0 | 3.21e-01 | 74.7% | 60.9% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.18e-01 | 80.5% | 78.0% |
| 4nehA04 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.51 | 42.0 | 3.50e-01 | 90.8% | 68.2% |
| 1x6vA02 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.51 | 42.0 | 3.54e-01 | 94.3% | 94.9% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 39.0 | 3.31e-01 | 85.1% | 87.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978130 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.62 | 51.0 | 3.78e-01 | 90.8% | 62.6% |
| 3475447 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.87e-01 | 90.8% | 67.9% |
| 3289833 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.54 | 39.0 | 3.34e-01 | 75.9% | 58.6% |
| 4990496 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 42.0 | 3.91e-01 | 85.1% | 83.5% |
| 4949945 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 40.0 | 3.58e-01 | 82.8% | 68.5% |
| 3940248 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 41.0 | 3.68e-01 | 100.0% | 60.0% |
| 4977711 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 41.0 | 3.51e-01 | 85.1% | 90.3% |
| 3981894 | 304.8.1.25 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5609 | 0.52 | 29.0 | 3.33e-01 | 82.8% | 73.8% |
| 4534805 | 304.5.1.12 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › Nit_Regul_Hom | 0.52 | 42.0 | 3.98e-01 | 92.0% | 85.5% |
| 4608277 | 1.1.9.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 | 0.52 | 39.0 | 3.45e-01 | 80.5% | 83.8% |
| 1031475 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 41.0 | 3.50e-01 | 87.4% | 85.8% |
| 4926888 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.51 | 38.0 | 3.39e-01 | 79.3% | 69.2% |
| 4634104 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 41.0 | 3.16e-01 | 89.7% | 61.9% |
| 3744808 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.51 | 41.0 | 3.27e-01 | 88.5% | 91.4% |
| 5018015 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.51 | 39.0 | 3.36e-01 | 82.8% | 88.3% |
| 1138340 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.50 | 40.0 | 3.41e-01 | 89.7% | 83.4% |