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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00202

Bact-Vir

LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00202

Identity

Kingdom:
phage

Quality

67.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-108
PDB
Domain cluster: rep: IMGVR_UViG_3300002123_000309-3300002123-C687J26634_1000443711__D6-95
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 36.0 4.27e-01 86.9% 90.0%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 37.0 3.54e-01 91.6% 52.8%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.59 37.0 4.40e-01 98.1% 97.1%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.53 33.0 3.28e-01 94.4% 56.9%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 28.0 3.52e-01 86.0% 86.4%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 42.0 3.97e-01 100.0% 76.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4586147 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.52 35.0 3.73e-01 87.9% 78.9%
3884680 292.2.1.6 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.51 36.0 3.59e-01 100.0% 70.0%
3643291 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 40.0 4.05e-01 100.0% 82.7%
D2 high residues 120-168
PDB