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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00232

Bact-Vir

LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00232

Identity

Kingdom:
phage

Quality

73.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 26.0 3.44e-01 76.1% 64.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.38e-01 97.2% 75.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.49e-01 95.8% 86.7%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 37.0 3.63e-01 97.2% 61.8%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.56 48.0 4.44e-01 100.0% 83.2%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.56 46.0 4.33e-01 97.2% 83.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.31e-01 97.2% 58.0%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 37.0 3.74e-01 95.8% 69.9%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.54 33.0 3.94e-01 88.7% 93.5%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.53 45.0 3.90e-01 97.2% 85.8%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.34e-01 95.8% 75.5%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 43.0 4.36e-01 93.0% 100.0%
2qjyB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.52 38.0 2.83e-01 81.7% 95.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.59e-01 95.8% 90.7%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.91e-01 74.6% 81.6%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.52 44.0 3.90e-01 100.0% 94.5%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 30.0 3.44e-01 94.4% 85.1%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.70e-01 93.0% 98.9%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.45e-01 93.0% 67.9%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 39.0 3.71e-01 90.1% 97.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028969 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 48.0 4.16e-01 100.0% 78.2%
3716765 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 42.0 2.51e-01 88.7% 73.8%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.53 45.0 3.69e-01 94.4% 74.6%
5054088 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 37.0 2.64e-01 78.9% 38.1%
3577711 3246.1.1.0 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins 0.52 31.0 3.12e-01 84.5% 58.7%