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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00277

Bact-Vir

LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00277

Identity

Kingdom:
phage

Quality

65.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-53
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.84 66.0 6.72e-01 97.4% 94.7%
5kjpA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.82 66.0 5.91e-01 97.4% 63.8%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.80 62.0 5.60e-01 97.4% 62.1%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.79 66.0 6.02e-01 100.0% 71.4%
4qmaA01 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.78 66.0 6.57e-01 100.0% 97.5%
4og1A02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.77 59.0 5.44e-01 97.4% 63.8%
5c9gA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.77 61.0 5.43e-01 97.4% 61.4%
4jvtA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.76 60.0 6.00e-01 97.4% 97.6%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 62.0 5.81e-01 100.0% 88.2%
4uzzB00 6.10.250.2800 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 57.0 4.90e-01 87.2% 55.4%
1dciA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.74 60.0 5.28e-01 100.0% 60.3%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 61.0 4.07e-01 100.0% 60.2%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.73 60.0 5.47e-01 100.0% 71.9%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.73 57.0 4.15e-01 100.0% 30.8%
2xkoC02 6.10.250.870 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 57.0 5.85e-01 97.4% 94.6%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.72 59.0 5.47e-01 100.0% 72.5%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.71 55.0 4.09e-01 100.0% 32.3%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.70 52.0 3.95e-01 89.7% 32.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.70 56.0 5.01e-01 97.4% 63.2%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.70 53.0 5.09e-01 94.9% 83.7%
2l35A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.69 56.0 4.99e-01 100.0% 68.3%
4di1C02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.69 52.0 5.17e-01 97.4% 90.2%
4jcsA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.67 49.0 4.50e-01 97.4% 58.1%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.66 48.0 4.07e-01 100.0% 43.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 51.0 3.87e-01 100.0% 34.8%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 48.0 4.54e-01 97.4% 69.8%
1z8sA02 6.10.140.360 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.61e-01 100.0% 100.0%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.60 50.0 4.41e-01 94.9% 62.7%
2yi9A02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 45.0 4.29e-01 100.0% 69.2%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.59 45.0 4.42e-01 100.0% 95.7%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.55 43.0 2.89e-01 97.4% 56.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3565959 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.93 85.0 5.11e-01 100.0% 18.2%
4937584 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.83 70.0 5.74e-01 100.0% 54.7%
4663744 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.82 65.0 4.73e-01 97.4% 32.7%
3623989 323.1.1.6 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.80 64.0 4.33e-01 97.4% 24.0%
197868 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.79 66.0 6.20e-01 100.0% 78.4%
3850124 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.78 64.0 4.08e-01 100.0% 18.5%
4027497 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.75 61.0 5.50e-01 100.0% 71.7%
3212519 192.31.1.0 ↗ alpha bundles › Long alpha-hairpin › CP12 › CP12 0.69 54.0 5.62e-01 92.3% 100.0%