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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00445
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00445
Identity
- Kingdom:
- phage
Quality
65.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-52
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.76 | 58.0 | 6.06e-01 | 100.0% | 93.5% |
| 1bdyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.66 | 56.0 | 4.30e-01 | 100.0% | 93.5% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.66 | 50.0 | 3.15e-01 | 100.0% | 14.1% |
| 4dguA02 | 2.60.40.2670 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 50.0 | 4.07e-01 | 92.2% | 97.1% |
| 5i0fB04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 44.0 | 3.83e-01 | 92.2% | 46.4% |
| 3bb6C00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 52.0 | 4.13e-01 | 100.0% | 50.9% |
| 5jouA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 42.0 | 3.78e-01 | 92.2% | 50.6% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 42.0 | 4.28e-01 | 92.2% | 83.3% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.59 | 47.0 | 3.83e-01 | 100.0% | 93.0% |
| 5aedA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 39.0 | 3.37e-01 | 82.4% | 38.9% |
| 3bwnD01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 42.0 | 3.20e-01 | 82.4% | 39.6% |
| 1iv8A05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 37.0 | 3.56e-01 | 92.2% | 53.0% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.57 | 48.0 | 4.12e-01 | 100.0% | 92.0% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 46.0 | 3.45e-01 | 100.0% | 34.0% |
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 39.0 | 2.80e-01 | 76.5% | 30.6% |
| 2hoxA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.33e-01 | 88.2% | 87.6% |
| 3itqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.54 | 42.0 | 2.96e-01 | 92.2% | 45.9% |
| 4p72A03 | 3.50.40.10 | Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 | 0.54 | 42.0 | 3.02e-01 | 100.0% | 87.4% |
| 3g7kB02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 43.0 | 2.93e-01 | 90.2% | 59.1% |
| 1o6zA01 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 37.0 | 2.69e-01 | 78.4% | 95.7% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078669 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.94 | 88.0 | 8.29e-01 | 100.0% | 93.2% |
| 5009 | 4076.3.1.2 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF | 0.76 | 58.0 | 5.94e-01 | 100.0% | 87.8% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.73 | 57.0 | 5.81e-01 | 100.0% | 90.0% |
| 4988095 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.73 | 60.0 | 6.08e-01 | 100.0% | 96.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 56.0 | 5.82e-01 | 98.0% | 97.8% |
| 3703797 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.72 | 54.0 | 5.29e-01 | 100.0% | 78.2% |
| 4956454 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 54.0 | 5.36e-01 | 100.0% | 78.2% |
| 5000438 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 56.0 | 5.12e-01 | 100.0% | 64.3% |
| 3705471 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.72 | 53.0 | 5.29e-01 | 100.0% | 78.2% |
| 3595897 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.71 | 52.0 | 5.10e-01 | 100.0% | 74.5% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.69 | 54.0 | 5.50e-01 | 100.0% | 95.8% |
| 3593781 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.69 | 55.0 | 5.40e-01 | 100.0% | 83.6% |
| 3251095 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.69 | 52.0 | 5.03e-01 | 100.0% | 73.3% |
| 3716713 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 54.0 | 5.46e-01 | 100.0% | 94.0% |
| 4943677 | 12.1.1.119 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5110 | 0.67 | 49.0 | 4.01e-01 | 92.2% | 41.0% |
| 3270868 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.67 | 50.0 | 4.92e-01 | 100.0% | 78.2% |
| 4048813 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.67 | 50.0 | 4.93e-01 | 100.0% | 78.2% |
| 1346119 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.67 | 52.0 | 5.21e-01 | 100.0% | 88.2% |
| 4641420 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.66 | 51.0 | 4.34e-01 | 100.0% | 50.0% |
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 49.0 | 5.10e-01 | 96.1% | 95.6% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.65 | 48.0 | 4.99e-01 | 100.0% | 93.3% |
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 50.0 | 5.07e-01 | 100.0% | 94.0% |
| 5036149 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 47.0 | 4.88e-01 | 98.0% | 97.8% |
| 4536596 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 47.0 | 4.85e-01 | 100.0% | 93.8% |
| 4280403 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.62 | 46.0 | 4.72e-01 | 96.1% | 95.6% |
| 2404978 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.61 | 43.0 | 3.60e-01 | 82.4% | 40.2% |
| 3607707 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.57 | 45.0 | 3.67e-01 | 92.2% | 49.5% |
| None | — | 0.57 | 47.0 | 4.34e-01 | 100.0% | 84.3% | |
| 4494370 | 205.1.1.82 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_6, Fer4_10 | 0.56 | 47.0 | 4.24e-01 | 100.0% | 78.7% |
| 4958084 | 205.1.1.131 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_9 | 0.56 | 45.0 | 4.31e-01 | 100.0% | 90.8% |
| 3348024 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.55 | 44.0 | 3.33e-01 | 98.0% | 60.7% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.55 | 38.0 | 3.95e-01 | 100.0% | 88.9% |
| 3368067 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.54 | 44.0 | 2.79e-01 | 100.0% | 26.8% |
| 3424914 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.54 | 44.0 | 2.79e-01 | 100.0% | 25.8% |
| 3826676 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.54 | 43.0 | 2.74e-01 | 100.0% | 25.5% |
| 5079205 | 205.1.1.33 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_10 | 0.53 | 43.0 | 4.18e-01 | 100.0% | 98.3% |
| 4952611 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.53 | 42.0 | 3.69e-01 | 100.0% | 65.6% |
| 4015629 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 37.0 | 3.41e-01 | 78.4% | 81.3% |
| 4965857 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.53 | 36.0 | 3.36e-01 | 72.5% | 91.3% |
| 5069246 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 35.0 | 3.58e-01 | 70.6% | 92.0% |
| 3440301 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 36.0 | 3.43e-01 | 78.4% | 85.7% |
| 4563102 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.51 | 39.0 | 3.14e-01 | 92.2% | 95.2% |
| 4002849 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.51 | 34.0 | 3.55e-01 | 96.1% | 80.0% |
| 5008248 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.51 | 34.0 | 2.17e-01 | 86.3% | 11.6% |
| None | — | 0.50 | 38.0 | 3.85e-01 | 98.0% | 98.2% | |
| 3597664 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.50 | 32.0 | 3.37e-01 | 94.1% | 73.3% |