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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00458
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00458
Identity
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-64
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.80 | 61.0 | 4.77e-01 | 81.0% | 43.1% |
| 3hrpA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.66 | 45.0 | 2.84e-01 | 72.4% | 24.3% |
| 2hq4A00 | 3.40.1600.10 | Alpha Beta › 3-Layer(aba) Sandwich › PH1570-like fold › PH1570-like | 0.64 | 44.0 | 3.26e-01 | 81.0% | 26.6% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.62 | 47.0 | 4.27e-01 | 82.8% | 87.3% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 52.0 | 3.72e-01 | 100.0% | 55.3% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 51.0 | 4.08e-01 | 96.6% | 91.8% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.60 | 44.0 | 3.99e-01 | 79.3% | 86.4% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 51.0 | 4.28e-01 | 98.3% | 59.6% |
| 1kmdA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 43.0 | 3.47e-01 | 77.6% | 88.0% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.60 | 43.0 | 3.88e-01 | 79.3% | 85.9% |
| 3o4hA01 | 2.130.10.150 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain | 0.60 | 50.0 | 3.27e-01 | 100.0% | 30.3% |
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.58 | 42.0 | 3.62e-01 | 79.3% | 74.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.58 | 50.0 | 4.15e-01 | 100.0% | 64.2% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.58 | 42.0 | 3.79e-01 | 79.3% | 84.5% |
| 2r9yA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 43.0 | 3.26e-01 | 82.8% | 76.0% |
| 2eeiA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 39.0 | 3.38e-01 | 75.9% | 65.1% |
| 1x9yA01 | 3.10.500.10 | Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain | 0.56 | 49.0 | 3.51e-01 | 96.6% | 55.9% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 4.11e-01 | 70.7% | 93.8% |
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 42.0 | 3.14e-01 | 82.8% | 41.8% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 37.0 | 3.61e-01 | 70.7% | 80.9% |
| 2c4eA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 44.0 | 2.82e-01 | 89.7% | 52.2% |
| 4du5B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 43.0 | 2.79e-01 | 89.7% | 54.9% |
| 4e84B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 43.0 | 2.77e-01 | 89.7% | 50.6% |
| 2eayB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 4.14e-01 | 75.9% | 95.9% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 3.72e-01 | 100.0% | 67.7% |
| 4ywoA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 3.08e-01 | 75.9% | 95.7% |
| 2dcnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 46.0 | 2.92e-01 | 96.6% | 44.8% |
| 1tyyA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 43.0 | 2.82e-01 | 94.8% | 40.7% |
| 2kxtA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.53 | 39.0 | 2.97e-01 | 86.2% | 93.5% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 41.0 | 3.62e-01 | 87.9% | 82.4% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 45.0 | 3.25e-01 | 100.0% | 62.7% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 2.83e-01 | 98.3% | 47.8% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 45.0 | 3.06e-01 | 100.0% | 37.0% |
| 1iyjB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 40.0 | 3.33e-01 | 87.9% | 71.1% |
| 3h49B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 41.0 | 2.70e-01 | 93.1% | 52.8% |
| 2r6uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 41.0 | 3.25e-01 | 87.9% | 80.3% |
| 3bf5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 38.0 | 2.67e-01 | 87.9% | 51.3% |
| 3fd0A01 | 3.90.1150.60 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain | 0.51 | 38.0 | 2.71e-01 | 81.0% | 59.6% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 40.0 | 3.83e-01 | 93.1% | 76.4% |
| 2pvpA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 38.0 | 3.14e-01 | 86.2% | 49.6% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.50 | 40.0 | 3.55e-01 | 94.8% | 82.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3479594 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 43.0 | 4.44e-01 | 74.1% | 74.5% |
| 3495264 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 45.0 | 3.11e-01 | 74.1% | 52.2% |
| 4474942 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.63 | 45.0 | 4.22e-01 | 77.6% | 82.7% |
| 4174140 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.63 | 45.0 | 4.12e-01 | 77.6% | 92.5% |
| 3289942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 44.0 | 3.93e-01 | 74.1% | 87.1% |
| 3165786 | 243.4.1.1 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N | 0.62 | 44.0 | 4.24e-01 | 100.0% | 66.2% |
| 4304159 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.62 | 42.0 | 3.62e-01 | 72.4% | 89.0% |
| 3273591 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 44.0 | 3.41e-01 | 75.9% | 48.5% |
| 4558923 | 865.1.1.2 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C | 0.61 | 46.0 | 3.82e-01 | 82.8% | 88.6% |
| 2077327 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.60 | 42.0 | 3.62e-01 | 74.1% | 80.9% |
| 3576634 | 5.1.2.31 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BING4CT | 0.59 | 45.0 | 3.37e-01 | 82.8% | 43.4% |
| 3491870 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.59 | 33.0 | 4.01e-01 | 81.0% | 91.4% |
| 5017082 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.59 | 43.0 | 2.70e-01 | 79.3% | 38.3% |
| 4029057 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 50.0 | 4.15e-01 | 98.3% | 80.0% |
| 3470049 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.58 | 44.0 | 2.52e-01 | 87.9% | 41.3% |
| 4992470 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.58 | 39.0 | 3.92e-01 | 70.7% | 75.0% |
| 3254788 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 40.0 | 3.01e-01 | 74.1% | 30.3% |
| 4454944 | 101.1.2.468 ↗ | alpha arrays › HTH › HTH › winged helix domain › McbB | 0.57 | 44.0 | 4.03e-01 | 86.2% | 78.8% |
| 1930964 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 38.0 | 3.70e-01 | 70.7% | 79.4% |
| 5052723 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 45.0 | 4.06e-01 | 87.9% | 87.5% |
| 4040812 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.56 | 40.0 | 3.55e-01 | 77.6% | 87.6% |
| 3661397 | 2485.1.1.40 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 | 0.56 | 44.0 | 3.44e-01 | 91.4% | 75.7% |
| 3840270 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 41.0 | 3.28e-01 | 79.3% | 40.0% |
| 3797570 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 42.0 | 2.85e-01 | 86.2% | 38.3% |
| 3372525 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.53 | 40.0 | 2.47e-01 | 81.0% | 27.3% |
| 141372 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.53 | 42.0 | 3.65e-01 | 87.9% | 82.4% |
| 3602759 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 38.0 | 3.79e-01 | 87.9% | 73.3% |
| 3562026 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.53 | 41.0 | 3.98e-01 | 87.9% | 96.9% |
| 3627795 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.70e-01 | 87.9% | 61.2% |
| 4973506 | 2.1.1.364 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110 | 0.52 | 41.0 | 3.75e-01 | 87.9% | 87.5% |
| 3455391 | 2004.1.1.51 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 | 0.52 | 42.0 | 3.19e-01 | 94.8% | 73.9% |
| 4985014 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 44.0 | 3.67e-01 | 98.3% | 84.8% |
| 3383223 | 375.1.1.53 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 | 0.51 | 34.0 | 3.54e-01 | 94.8% | 76.4% |
| 4028678 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.51 | 39.0 | 2.88e-01 | 89.7% | 52.2% |
D2
high
residues 119-195
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sigA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.78 | 64.0 | 4.20e-01 | 92.2% | 22.3% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.76 | 57.0 | 5.64e-01 | 93.5% | 75.3% |
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.74 | 58.0 | 5.57e-01 | 93.5% | 74.7% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 60.0 | 5.81e-01 | 92.2% | 83.5% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 57.0 | 5.51e-01 | 94.8% | 76.1% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.66 | 58.0 | 4.80e-01 | 97.4% | 69.6% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.64 | 57.0 | 4.79e-01 | 100.0% | 62.3% |
| 3gcgB00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.63 | 51.0 | 4.07e-01 | 88.3% | 78.9% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.63 | 54.0 | 5.16e-01 | 98.7% | 92.3% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 44.0 | 3.53e-01 | 75.3% | 85.6% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.61 | 55.0 | 4.74e-01 | 98.7% | 67.8% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.61 | 53.0 | 4.09e-01 | 100.0% | 72.1% |
| 8etcb01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 46.0 | 3.69e-01 | 79.2% | 93.2% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.60 | 54.0 | 4.07e-01 | 100.0% | 48.6% |
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.60 | 52.0 | 4.19e-01 | 100.0% | 57.0% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.59 | 45.0 | 4.75e-01 | 85.7% | 100.0% |
| 3k1zA02 | 1.10.150.720 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase | 0.59 | 46.0 | 4.56e-01 | 87.0% | 79.8% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 45.0 | 4.53e-01 | 85.7% | 81.0% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.58 | 41.0 | 4.08e-01 | 75.3% | 98.8% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 38.0 | 2.99e-01 | 72.7% | 29.7% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 45.0 | 3.74e-01 | 92.2% | 78.7% |
| 3hjeA03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.53 | 42.0 | 3.99e-01 | 96.1% | 72.5% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.52 | 47.0 | 3.36e-01 | 96.1% | 51.7% |
| 1dosA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 39.0 | 2.59e-01 | 81.8% | 87.7% |
| 7e1lB01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 45.0 | 3.38e-01 | 97.4% | 92.3% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 3.14e-01 | 93.5% | 69.3% |
| 3cdlB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.56e-01 | 93.5% | 95.5% |
| 4dhxB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.50 | 36.0 | 3.46e-01 | 76.6% | 100.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284058 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.78 | 66.0 | 6.44e-01 | 100.0% | 84.7% |
| 2389466 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.78 | 60.0 | 5.79e-01 | 88.3% | 74.1% |
| 3584804 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.77 | 65.0 | 5.87e-01 | 93.5% | 68.6% |
| 3959877 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.73 | 61.0 | 5.46e-01 | 100.0% | 64.5% |
| 5078899 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.71 | 58.0 | 5.20e-01 | 90.9% | 69.1% |
| 5073390 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 59.0 | 5.10e-01 | 94.8% | 62.4% |
| 3783811 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.70 | 56.0 | 5.47e-01 | 87.0% | 83.5% |
| 3787527 | 142.3.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C | 0.65 | 53.0 | 5.19e-01 | 89.6% | 100.0% |
| 3590119 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.65 | 51.0 | 4.86e-01 | 90.9% | 73.3% |
| 3717477 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.64 | 55.0 | 5.53e-01 | 98.7% | 98.8% |
| 3503174 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.63 | 44.0 | 3.91e-01 | 72.7% | 52.7% |
| 4182671 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.62 | 52.0 | 3.61e-01 | 90.9% | 39.6% |
| 5046777 | 7583.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom | 0.62 | 50.0 | 3.62e-01 | 97.4% | 30.2% |
| 3932810 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.62 | 43.0 | 3.67e-01 | 72.7% | 53.6% |
| 3164063 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 47.0 | 4.92e-01 | 81.8% | 88.6% |
| 5051025 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 46.0 | 4.20e-01 | 93.5% | 59.0% |
| 3207585 | 142.3.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C | 0.61 | 51.0 | 5.12e-01 | 93.5% | 96.2% |
| 3635933 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.59 | 42.0 | 4.26e-01 | 74.0% | 89.3% |
| 1146718 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.59 | 50.0 | 4.08e-01 | 100.0% | 55.8% |
| 3721449 | 7076.1.1.0 ↗ | 0.58 | 40.0 | 3.88e-01 | 70.1% | 96.5% | |
| 3449811 | 101.1.10.38 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF247 | 0.58 | 46.0 | 3.94e-01 | 85.7% | 54.8% |
| 5077964 | 3355.1.1.41 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DUF401 | 0.57 | 45.0 | 2.98e-01 | 89.6% | 67.3% |
| 3974778 | 191.1.1.11 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 | 0.57 | 48.0 | 3.94e-01 | 92.2% | 95.7% |
| 3211383 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.56 | 45.0 | 4.13e-01 | 87.0% | 85.0% |
| 3257232 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.55 | 46.0 | 3.32e-01 | 92.2% | 72.0% |
| 4958850 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 44.0 | 4.08e-01 | 85.7% | 98.9% |
| 4928145 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.55 | 38.0 | 3.80e-01 | 74.0% | 70.0% |
| 3286925 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.55 | 45.0 | 3.91e-01 | 90.9% | 77.5% |
| 142849 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.54 | 45.0 | 3.69e-01 | 90.9% | 77.0% |
| 3726619 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 46.0 | 3.54e-01 | 100.0% | 44.2% |
| 3959988 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 48.0 | 4.14e-01 | 96.1% | 87.6% |
| 1316897 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.53 | 43.0 | 3.99e-01 | 89.6% | 99.0% |
| 3785931 | 195.1.1.3 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N | 0.51 | 39.0 | 3.42e-01 | 87.0% | 63.1% |
| 4486891 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.51 | 44.0 | 2.90e-01 | 96.1% | 65.5% |
| 3590073 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.50 | 44.0 | 4.27e-01 | 96.1% | 97.6% |
| 3232649 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.50 | 42.0 | 3.87e-01 | 90.9% | 86.0% |
D3
high
residues 226-299
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.72 | 63.0 | 5.77e-01 | 97.3% | 80.4% |
| 3sk9A00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.72 | 65.0 | 4.53e-01 | 100.0% | 77.0% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.72 | 61.0 | 5.85e-01 | 98.6% | 84.3% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.72 | 62.0 | 4.75e-01 | 98.6% | 54.3% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.72 | 64.0 | 4.87e-01 | 100.0% | 62.4% |
| 2gmyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.71 | 52.0 | 4.20e-01 | 78.4% | 80.0% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.70 | 61.0 | 4.62e-01 | 100.0% | 53.0% |
| 3gw7A00 | 1.10.3210.50 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.70 | 61.0 | 4.38e-01 | 97.3% | 46.0% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.69 | 53.0 | 4.29e-01 | 98.6% | 43.7% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.68 | 62.0 | 4.53e-01 | 100.0% | 64.2% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 5.58e-01 | 97.3% | 96.9% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.68 | 61.0 | 4.51e-01 | 100.0% | 66.1% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 5.24e-01 | 94.6% | 100.0% |
| 3knwB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 43.0 | 3.33e-01 | 70.3% | 65.0% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.62 | 53.0 | 5.00e-01 | 100.0% | 90.1% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.63e-01 | 90.5% | 78.9% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 52.0 | 4.38e-01 | 94.6% | 76.0% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 53.0 | 4.41e-01 | 100.0% | 75.2% |
| 8h72B01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 53.0 | 3.53e-01 | 100.0% | 79.7% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.60 | 49.0 | 4.42e-01 | 93.2% | 96.3% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 50.0 | 4.28e-01 | 98.6% | 71.0% |
| 3i4uA01 | 1.20.120.1080 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 45.0 | 4.17e-01 | 85.1% | 77.3% |
| 4lqkA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.58 | 40.0 | 3.40e-01 | 73.0% | 49.2% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.58 | 43.0 | 3.74e-01 | 100.0% | 51.3% |
| 5wbwA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.58 | 41.0 | 3.28e-01 | 75.7% | 38.9% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 35.0 | 3.71e-01 | 85.1% | 68.2% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.57 | 42.0 | 3.49e-01 | 77.0% | 82.3% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 38.0 | 3.36e-01 | 98.6% | 46.3% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 37.0 | 4.19e-01 | 93.2% | 90.9% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.56 | 41.0 | 2.81e-01 | 77.0% | 30.3% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.56 | 37.0 | 3.30e-01 | 98.6% | 47.2% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 39.0 | 3.37e-01 | 73.0% | 91.1% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 46.0 | 4.80e-01 | 97.3% | 100.0% |
| 3eo8A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 47.0 | 3.42e-01 | 98.6% | 61.6% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.55 | 51.0 | 4.85e-01 | 100.0% | 90.6% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 40.0 | 3.70e-01 | 91.9% | 61.3% |
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.54 | 45.0 | 3.52e-01 | 100.0% | 80.4% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 44.0 | 3.39e-01 | 91.9% | 85.8% |
| 3broD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.80e-01 | 100.0% | 84.3% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 46.0 | 3.88e-01 | 100.0% | 70.0% |
| 2o57A01 | 1.10.287.840 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like | 0.52 | 46.0 | 4.06e-01 | 97.3% | 67.6% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 40.0 | 3.94e-01 | 94.6% | 76.6% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 46.0 | 3.61e-01 | 100.0% | 67.7% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.52 | 37.0 | 3.78e-01 | 98.6% | 75.7% |
| 4dylA02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.52 | 40.0 | 3.68e-01 | 93.2% | 64.9% |
| 4yerA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.04e-01 | 93.2% | 34.7% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 42.0 | 3.95e-01 | 87.8% | 82.8% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 39.0 | 3.79e-01 | 83.8% | 78.3% |
| 2wtbA03 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.50 | 44.0 | 3.28e-01 | 98.6% | 61.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596443 | 101.26.1.1 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N | 0.76 | 62.0 | 6.17e-01 | 89.2% | 86.7% |
| 1316897 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.73 | 64.0 | 5.89e-01 | 100.0% | 75.8% |
| 3625029 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 60.0 | 5.38e-01 | 98.6% | 65.7% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.70 | 60.0 | 5.32e-01 | 97.3% | 66.4% |
| 4964894 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.68 | 57.0 | 4.20e-01 | 98.6% | 46.4% |
| 4532470 | 2004.1.3.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.67 | 55.0 | 4.61e-01 | 91.9% | 56.9% |
| 3697760 | 5050.1.1.12 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12 | 0.67 | 60.0 | 3.55e-01 | 100.0% | 49.9% |
| 3183576 | 3985.1.1.1 ↗ | alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM | 0.66 | 52.0 | 5.12e-01 | 85.1% | 96.2% |
| 4405928 | 5086.1.1.196 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX | 0.63 | 41.0 | 4.22e-01 | 98.6% | 70.0% |
| 3494217 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 57.0 | 3.08e-01 | 100.0% | 12.7% |
| 3312910 | 603.1.1.111 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N | 0.63 | 42.0 | 3.92e-01 | 100.0% | 56.7% |
| 3030421 | 143.2.1.0 ↗ | alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 | 0.62 | 41.0 | 3.46e-01 | 95.9% | 40.3% |
| 4166913 | 1156.1.1.1 ↗ | alpha complex topology › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124_C | 0.62 | 52.0 | 4.22e-01 | 94.6% | 52.4% |
| 3732909 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 41.0 | 4.02e-01 | 100.0% | 63.7% |
| 3800965 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 47.0 | 4.09e-01 | 97.3% | 53.3% |
| 143631 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.60 | 53.0 | 4.27e-01 | 100.0% | 70.5% |
| 4357827 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.58 | 40.0 | 4.15e-01 | 74.3% | 76.8% |
| 4950284 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.57 | 49.0 | 4.45e-01 | 100.0% | 73.3% |
| 3273733 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.57 | 43.0 | 4.24e-01 | 83.8% | 87.5% |
| 4397698 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.56 | 45.0 | 3.84e-01 | 86.5% | 69.2% |
| 4632217 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.56 | 41.0 | 4.14e-01 | 77.0% | 97.3% |
| 3584334 | 604.12.1.56 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER | 0.56 | 41.0 | 3.89e-01 | 89.2% | 64.4% |
| 4981630 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.56 | 47.0 | 4.60e-01 | 100.0% | 91.8% |
| 3297509 | 148.1.3.318 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28551 | 0.55 | 42.0 | 4.32e-01 | 87.8% | 85.7% |
| 5053927 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.54 | 41.0 | 3.42e-01 | 83.8% | 47.9% |
| 3959687 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.54 | 41.0 | 3.72e-01 | 98.6% | 59.6% |
| 3680096 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 41.0 | 3.35e-01 | 94.6% | 45.1% |
| 3611631 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.53 | 37.0 | 3.28e-01 | 100.0% | 47.8% |
| 3958870 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.53 | 40.0 | 3.67e-01 | 94.6% | 62.1% |
| 3784411 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.53 | 45.0 | 4.45e-01 | 95.9% | 85.0% |
| 4580956 | 2484.1.1.222 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 | 0.53 | 41.0 | 3.00e-01 | 89.2% | 31.1% |
| 3815712 | 5086.1.1.15 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Mit_KHE1 | 0.51 | 41.0 | 2.84e-01 | 86.5% | 38.3% |
| 3713381 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.51 | 44.0 | 4.08e-01 | 98.6% | 74.7% |
| 3277496 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 42.0 | 2.87e-01 | 94.6% | 27.9% |
| 3181323 | 192.29.1.296 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ceramidase | 0.50 | 39.0 | 3.25e-01 | 85.1% | 73.1% |
| 1144728 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.50 | 39.0 | 3.63e-01 | 91.9% | 66.0% |