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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00461
Bact-VirLacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00461
Identity
- Kingdom:
- phage
Quality
72.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-104
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18143.7 best | HAD_SAK_2 | 40.2 | 6.10e-10 | 100.0% | 48.9% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5djsA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.65 | 46.0 | 3.71e-01 | 100.0% | 37.5% |
| 5jicA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 54.0 | 4.32e-01 | 100.0% | 87.9% |
| 3vovA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 54.0 | 4.50e-01 | 100.0% | 98.1% |
| 3grcA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 40.0 | 3.57e-01 | 100.0% | 44.8% |
| 3erwF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 44.0 | 3.85e-01 | 100.0% | 48.9% |
| 2nqlA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.61 | 40.0 | 2.99e-01 | 100.0% | 25.9% |
| 1b93B00 | 3.40.50.1380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain | 0.61 | 37.0 | 3.10e-01 | 100.0% | 33.8% |
| 4xfjB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 52.0 | 4.17e-01 | 100.0% | 80.9% |
| 1hyhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 44.0 | 3.75e-01 | 100.0% | 48.2% |
| 4nesA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 43.0 | 3.43e-01 | 100.0% | 40.5% |
| 2d4aD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 44.0 | 3.75e-01 | 100.0% | 50.4% |
| 3wqoA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.56 | 49.0 | 3.49e-01 | 100.0% | 43.2% |
| 7d73E01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 46.0 | 3.46e-01 | 100.0% | 35.5% |
| 3oyzA01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.56 | 44.0 | 3.20e-01 | 100.0% | 28.0% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 49.0 | 4.05e-01 | 100.0% | 72.3% |
| 4uulA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 43.0 | 3.63e-01 | 100.0% | 48.0% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 48.0 | 3.97e-01 | 100.0% | 76.4% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 48.0 | 4.02e-01 | 100.0% | 73.8% |
| 1y97A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 48.0 | 3.68e-01 | 100.0% | 67.0% |
| 1z90B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 43.0 | 2.96e-01 | 90.5% | 67.1% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 47.0 | 3.93e-01 | 100.0% | 73.2% |
| 6r8gA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 40.0 | 3.51e-01 | 100.0% | 49.3% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 37.0 | 2.65e-01 | 100.0% | 22.4% |
| 2vliB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.71e-01 | 100.0% | 60.1% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 3.83e-01 | 100.0% | 74.5% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 3.79e-01 | 100.0% | 72.9% |
| 2zjgA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 44.0 | 3.28e-01 | 100.0% | 37.5% |
| 3l5lA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 44.0 | 3.01e-01 | 100.0% | 35.1% |
| 1vp4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 38.0 | 2.80e-01 | 100.0% | 28.8% |
| 3n8hA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 3.58e-01 | 100.0% | 85.8% |
| 2qgqA01 | 3.80.30.20 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain | 0.52 | 41.0 | 3.10e-01 | 100.0% | 34.4% |
| 1dnpA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 45.0 | 3.92e-01 | 100.0% | 96.9% |
| 3gkfA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 40.0 | 2.86e-01 | 88.1% | 39.1% |
| 3n05A02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 44.0 | 3.46e-01 | 100.0% | 81.0% |
| 2k6vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 41.0 | 3.33e-01 | 100.0% | 44.8% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3584528 | 2006.1.1.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_2 | 0.82 | 76.0 | 5.91e-01 | 100.0% | 48.8% |
| 3590730 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.69 | 61.0 | 4.58e-01 | 100.0% | 61.0% |
| 4302118 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.66 | 48.0 | 3.76e-01 | 100.0% | 35.1% |
| 170031 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.63 | 45.0 | 3.88e-01 | 100.0% | 47.0% |
| 4008911 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.62 | 45.0 | 3.08e-01 | 100.0% | 20.6% |
| 1698349 | 7512.1.1.33 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 | 0.60 | 43.0 | 3.28e-01 | 100.0% | 30.5% |
| 4618618 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.60 | 40.0 | 2.89e-01 | 100.0% | 23.2% |
| 3601621 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.59 | 52.0 | 3.90e-01 | 100.0% | 39.0% |
| 3955590 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.59 | 52.0 | 3.91e-01 | 100.0% | 62.8% |
| 3947532 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 40.0 | 3.64e-01 | 100.0% | 50.0% |
| 3485789 | 2006.1.1.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase | 0.59 | 52.0 | 4.76e-01 | 100.0% | 77.9% |
| None | — | 0.57 | 48.0 | 3.18e-01 | 100.0% | 66.6% | |
| 3725962 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 45.0 | 3.57e-01 | 100.0% | 38.9% |
| 1414285 | 2002.1.1.256 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C | 0.57 | 44.0 | 3.18e-01 | 100.0% | 26.4% |
| 4206421 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.57 | 45.0 | 3.92e-01 | 100.0% | 56.2% |
| 4027246 | 2006.1.3.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim | 0.56 | 51.0 | 4.00e-01 | 100.0% | 52.0% |
| 4408648 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.56 | 37.0 | 2.85e-01 | 100.0% | 28.2% |
| 4950941 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.56 | 45.0 | 3.34e-01 | 100.0% | 31.0% |
| 3619194 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.55 | 40.0 | 3.49e-01 | 100.0% | 48.1% |
| 3217099 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.55 | 45.0 | 3.22e-01 | 100.0% | 27.9% |
| 4380205 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.55 | 48.0 | 3.98e-01 | 100.0% | 72.9% |
| 4971715 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 39.0 | 3.41e-01 | 100.0% | 48.5% |
| 3915237 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 46.0 | 3.56e-01 | 100.0% | 96.7% |
| 4961538 | 2002.1.1.256 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C | 0.54 | 44.0 | 2.86e-01 | 92.9% | 29.5% |
| 4073527 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.53 | 45.0 | 3.73e-01 | 100.0% | 81.8% |
| 4126648 | 2003.1.1.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA | 0.53 | 40.0 | 3.20e-01 | 100.0% | 37.8% |
| 3628496 | 2002.1.1.33 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 | 0.53 | 44.0 | 2.83e-01 | 100.0% | 32.4% |
| 4632177 | 3255.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP | 0.53 | 43.0 | 4.21e-01 | 100.0% | 82.1% |
| 4968350 | 7604.1.1.0 ↗ | a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.53 | 46.0 | 4.03e-01 | 100.0% | 83.1% |
| 4571925 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.53 | 44.0 | 3.07e-01 | 100.0% | 51.6% |
| 3928585 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.52 | 44.0 | 3.36e-01 | 100.0% | 56.0% |
| 4979811 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 42.0 | 3.14e-01 | 90.5% | 90.7% |
| 5041822 | 7597.1.1.1 ↗ | a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain › CW_binding_2 | 0.52 | 46.0 | 4.24e-01 | 100.0% | 78.2% |
| 3282981 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.51 | 44.0 | 3.70e-01 | 100.0% | 60.6% |
| 4299575 | 2005.1.1.21 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Pantoate_ligase | 0.51 | 43.0 | 3.52e-01 | 100.0% | 83.9% |
| 3738034 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.51 | 37.0 | 2.88e-01 | 100.0% | 33.3% |
| 4886531 | 2007.1.4.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK | 0.51 | 45.0 | 4.01e-01 | 100.0% | 78.3% |
| 4012500 | 2002.3.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 | 0.51 | 40.0 | 2.90e-01 | 89.3% | 46.7% |
| None | — | 0.50 | 44.0 | 2.89e-01 | 100.0% | 27.3% |