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LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00464

Bact-Vir

LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00464

Identity

Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-83_126-161
PDB
Domain cluster: rep: IMGVR_UViG_3300033149_000819-3300033149-Ga0366834_10926112__D3-89_131-208
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 26.0 3.41e-01 100.0% 64.6%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 37.0 3.92e-01 87.9% 65.1%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 36.0 3.85e-01 86.2% 65.7%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 33.0 3.83e-01 89.7% 77.5%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 3.62e-01 87.1% 63.1%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 4.79e-01 99.1% 98.9%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 37.0 4.24e-01 98.3% 89.4%
4rcjA01 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.57 41.0 3.84e-01 100.0% 59.6%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.65e-01 99.1% 60.7%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.53 45.0 4.65e-01 100.0% 95.5%
2mdaA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 33.0 3.54e-01 97.4% 74.7%
1gupA02 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.52 41.0 3.97e-01 97.4% 75.0%
3fk4B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.51 33.0 3.34e-01 89.7% 64.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016346 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.67 51.0 5.11e-01 100.0% 76.7%
5069899 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.67 51.0 5.07e-01 100.0% 76.7%
5012991 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.65 50.0 5.00e-01 100.0% 77.5%
4995779 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 61.0 5.57e-01 100.0% 97.3%
3942928 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 40.0 4.61e-01 100.0% 88.2%
4972120 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.62 52.0 5.33e-01 100.0% 90.9%
3483013 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.61 35.0 3.47e-01 87.9% 52.5%
3191453 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 33.0 3.78e-01 87.1% 72.9%
5027530 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.59 38.0 3.14e-01 96.6% 37.4%
3998221 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 42.0 3.91e-01 100.0% 59.3%
4932472 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 38.0 4.13e-01 98.3% 81.1%
3697211 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.57 37.0 2.97e-01 99.1% 32.3%
3197049 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 32.0 3.29e-01 87.1% 54.5%
3616263 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 40.0 4.30e-01 100.0% 85.0%
3731159 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.56 35.0 3.60e-01 87.9% 63.6%
3180579 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 43.0 3.11e-01 85.3% 98.0%
5013126 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.13e-01 96.6% 76.8%
5042834 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 35.0 3.28e-01 100.0% 50.7%
5037695 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.53 33.0 3.26e-01 88.8% 56.0%
3978576 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 39.0 4.06e-01 100.0% 80.9%
3254842 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.81e-01 96.6% 28.8%
3932808 101.1.2.163 ↗ alpha arrays › HTH › HTH › winged helix domain › PMT2_N 0.52 37.0 3.20e-01 100.0% 45.9%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 34.0 3.73e-01 100.0% 84.2%
3938729 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 36.0 2.74e-01 74.1% 31.9%
4018043 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 36.0 2.60e-01 73.3% 38.1%
3203260 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.90e-01 88.8% 98.6%