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LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00095
Bact-VirLacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 54-155
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6lD00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.92 | 89.0 | 7.45e-01 | 100.0% | 70.3% |
| 3wp8A02 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.90 | 86.0 | 7.36e-01 | 100.0% | 74.3% |
| 3ntnB01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.90 | 86.0 | 7.09e-01 | 100.0% | 66.1% |
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.89 | 85.0 | 7.61e-01 | 100.0% | 85.2% |
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.88 | 84.0 | 6.71e-01 | 100.0% | 67.0% |
| 3sucA02 | 2.160.10.20 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Insect antifreeze protein | 0.86 | 80.0 | 7.22e-01 | 99.0% | 79.1% |
| 3ultA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.86 | 80.0 | 7.70e-01 | 100.0% | 91.2% |
| 2yo3A02 | 2.60.40.4050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.84 | 42.0 | 5.82e-01 | 70.6% | 94.4% |
| 2iu8C02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.81 | 76.0 | 5.85e-01 | 100.0% | 81.0% |
| 3tv0A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.81 | 72.0 | 6.39e-01 | 96.1% | 90.2% |
| 1hv9B02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.80 | 74.0 | 5.95e-01 | 100.0% | 67.7% |
| 4n27A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.80 | 71.0 | 5.87e-01 | 96.1% | 74.9% |
| 2wlgB00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.79 | 72.0 | 5.53e-01 | 96.1% | 73.2% |
| 7d6c401 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.78 | 55.0 | 5.60e-01 | 72.5% | 99.0% |
| 6sc4A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.77 | 72.0 | 5.87e-01 | 100.0% | 81.4% |
| 3jqyC00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.77 | 70.0 | 5.45e-01 | 100.0% | 77.3% |
| 2yo0A01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.76 | 63.0 | 5.34e-01 | 87.3% | 63.5% |
| 7ar7x01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 69.0 | 5.53e-01 | 100.0% | 72.6% |
| 3c8vA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.73 | 67.0 | 5.04e-01 | 100.0% | 65.0% |
| 1mr7C00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.69 | 55.0 | 4.44e-01 | 86.3% | 80.2% |
| 3f1xA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.67 | 53.0 | 5.50e-01 | 83.3% | 98.9% |
| 5l6vE02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.66 | 57.0 | 5.18e-01 | 92.2% | 87.8% |
| 2i5kA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.53 | 39.0 | 3.81e-01 | 77.5% | 97.3% |
| 4i84A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.52 | 47.0 | 3.38e-01 | 100.0% | 76.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984088 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.94 | 91.0 | 6.85e-01 | 100.0% | 54.8% |
| 4572690 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.94 | 90.0 | 8.72e-01 | 100.0% | 91.8% |
| 4593120 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.94 | 91.0 | 7.28e-01 | 100.0% | 65.7% |
| 3984087 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.93 | 89.0 | 7.51e-01 | 99.0% | 66.5% |
| 4597136 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.93 | 90.0 | 5.69e-01 | 100.0% | 32.5% |
| 5055775 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.93 | 90.0 | 6.61e-01 | 100.0% | 53.0% |
| 3982518 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.93 | 90.0 | 7.48e-01 | 100.0% | 69.4% |
| 5033305 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.93 | 90.0 | 7.48e-01 | 100.0% | 73.8% |
| 4394203 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.93 | 90.0 | 5.95e-01 | 100.0% | 32.2% |
| 2880595 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.92 | 89.0 | 5.95e-01 | 100.0% | 35.0% |
| 1834008 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.92 | 89.0 | 7.45e-01 | 100.0% | 70.3% |
| 4101253 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.92 | 89.0 | 7.16e-01 | 100.0% | 66.9% |
| 1503827 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.90 | 87.0 | 6.33e-01 | 100.0% | 48.9% |
| 4775891 | 208.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.90 | 86.0 | 7.15e-01 | 100.0% | 67.7% |
| 4225149 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.90 | 86.0 | 6.53e-01 | 100.0% | 58.1% |
| 185868 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.89 | 86.0 | 7.34e-01 | 100.0% | 84.7% |
| 3965420 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.89 | 85.0 | 7.81e-01 | 100.0% | 82.4% |
| 4883110 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.88 | 84.0 | 6.44e-01 | 100.0% | 53.9% |
| 3965888 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.88 | 84.0 | 6.46e-01 | 99.0% | 75.5% |
| 1146565 | 208.7.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › LbR_Ice_bind | 0.86 | 80.0 | 7.70e-01 | 100.0% | 91.2% |
| 3637127 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.79 | 71.0 | 5.89e-01 | 96.1% | 75.3% |
| 3978492 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.76 | 64.0 | 4.66e-01 | 88.2% | 41.6% |
| 4673672 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.71 | 67.0 | 5.17e-01 | 100.0% | 56.1% |
| 1189597 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.69 | 53.0 | 5.15e-01 | 81.4% | 100.0% |
| 4309106 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.68 | 57.0 | 4.70e-01 | 87.3% | 61.2% |
| 3985064 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.56 | 43.0 | 4.02e-01 | 99.0% | 64.8% |
D2
medium
residues 300-363
Domain cluster:
representative
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 10.6 | 9.10e-01 | 39.1% | 74.1% |
| PF05658.20 | YadA_head | 12.5 | 2.20e-01 | 34.4% | 81.5% |
| PF05658.20 | YadA_head | 16.0 | 1.80e-02 | 31.2% | 74.1% |
| PF05658.20 | YadA_head | 18.1 | 4.10e-03 | 31.2% | 63.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8tmsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 50.0 | 3.38e-01 | 100.0% | 59.6% |
| 5jlvC00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.50 | 41.0 | 3.75e-01 | 100.0% | 95.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4121946 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.61 | 53.0 | 4.08e-01 | 100.0% | 56.8% |
| 3715374 | 207.14.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DGF-1_beta-sheet | 0.50 | 38.0 | 3.28e-01 | 82.8% | 70.5% |
D3
medium
residues 364-484
Domain cluster:
rep: CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00298__D743-827
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 18.4 | 3.10e-03 | 22.3% | 100.0% |
| PF05658.20 | YadA_head | 11.0 | 6.90e-01 | 22.3% | 92.6% |
| PF05658.20 | YadA_head | 11.6 | 4.40e-01 | 19.8% | 85.2% |
D4
medium
residues 485-591
Domain cluster:
rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00146__D455-587
D5
medium
residues 592-674
Domain cluster:
representative
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3666251 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.84 | 77.0 | 5.27e-01 | 100.0% | 48.5% |
| 3454749 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.73 | 65.0 | 4.85e-01 | 100.0% | 63.3% |
| 3206069 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 51.0 | 4.57e-01 | 85.5% | 100.0% |
| 5006686 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.64 | 55.0 | 5.02e-01 | 98.8% | 93.0% |
D6
medium
residues 675-782
Domain cluster:
rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00146__D455-587
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 13.8 | 9.00e-02 | 25.0% | 100.0% |
| PF05658.20 | YadA_head | 14.2 | 6.50e-02 | 25.0% | 100.0% |
D7
medium
residues 783-862
Domain cluster:
rep: CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00298__D743-827
D8
medium
residues 996-1028
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1udxA03 | 3.30.300.350 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › GTP-binding protein OBG, C-terminal domain | 0.63 | 48.0 | 4.00e-01 | 100.0% | 81.1% |
| 2xf4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 43.0 | 2.76e-01 | 100.0% | 24.8% |
| 1cttA01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 41.0 | 2.90e-01 | 100.0% | 24.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4388047 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.61 | 47.0 | 3.83e-01 | 100.0% | 75.0% |
| 4268590 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.58 | 43.0 | 3.52e-01 | 100.0% | 70.6% |
| 3482521 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.54 | 40.0 | 2.49e-01 | 100.0% | 78.4% |
| 4181636 | 620.1.1.6 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 | 0.52 | 41.0 | 2.68e-01 | 100.0% | 37.0% |