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LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00121

Bact-Vir

LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00121

Identity

Kingdom:
phage

Quality

58.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-127
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 36.0 4.57e-01 81.5% 91.7%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 37.0 4.11e-01 84.3% 67.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 31.0 4.42e-01 78.7% 100.0%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 32.0 4.41e-01 80.6% 96.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.93e-01 88.9% 100.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 34.0 4.49e-01 85.2% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 35.0 4.49e-01 79.6% 100.0%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.34e-01 88.0% 100.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.50e-01 85.2% 100.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 34.0 4.03e-01 82.4% 82.7%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.46e-01 93.5% 97.3%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.59 37.0 4.03e-01 92.6% 75.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 39.0 4.22e-01 96.3% 83.7%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 4.31e-01 85.2% 82.7%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.11e-01 93.5% 95.9%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 40.0 4.11e-01 96.3% 78.6%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 4.05e-01 85.2% 79.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 34.0 3.55e-01 90.7% 66.7%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 34.0 3.49e-01 93.5% 62.6%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 4.56e-01 85.2% 100.0%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 3.90e-01 90.7% 94.6%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 32.0 3.92e-01 87.0% 95.6%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 43.0 4.27e-01 88.9% 99.1%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 37.0 2.72e-01 72.2% 37.1%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.89e-01 87.0% 83.7%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.80e-01 97.2% 77.1%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 4.06e-01 92.6% 83.5%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.76e-01 88.0% 83.6%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.96e-01 88.0% 91.0%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 4.15e-01 91.7% 87.4%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.85e-01 95.4% 76.1%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.51 43.0 4.37e-01 94.4% 100.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.77 54.0 6.01e-01 98.1% 91.8%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.73 34.0 4.98e-01 79.6% 98.0%
3592540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 40.0 5.32e-01 92.6% 98.3%
3393297 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 40.0 4.56e-01 88.0% 72.5%
3471771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 37.0 5.06e-01 81.5% 100.0%
3389311 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 39.0 4.10e-01 88.9% 59.0%
3231177 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.70 34.0 4.84e-01 79.6% 100.0%
3936430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 38.0 4.35e-01 88.0% 72.5%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.69 36.0 4.89e-01 88.0% 100.0%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 38.0 4.22e-01 91.7% 68.2%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.97e-01 94.4% 100.0%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 36.0 4.81e-01 89.8% 100.0%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 37.0 4.54e-01 90.7% 84.3%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 34.0 4.69e-01 77.8% 100.0%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.67 39.0 4.85e-01 85.2% 96.9%
3577505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.24e-01 91.7% 72.9%
3936926 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 34.0 4.21e-01 83.3% 83.1%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 33.0 4.19e-01 85.2% 86.9%
3359784 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 37.0 4.68e-01 88.9% 96.9%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 39.0 4.65e-01 91.7% 90.7%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 40.0 4.64e-01 89.8% 88.7%
3340900 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.69e-01 91.7% 100.0%
3815479 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.52e-01 90.7% 89.3%
3315100 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.63e-01 89.8% 98.5%
3326132 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 35.0 4.49e-01 89.8% 95.4%
5016579 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 39.0 4.40e-01 97.2% 86.1%
3964422 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 39.0 3.44e-01 87.0% 43.8%
3308604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 40.0 4.65e-01 94.4% 96.0%
3815480 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 36.0 4.54e-01 93.5% 100.0%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 39.0 4.57e-01 94.4% 94.7%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 37.0 4.42e-01 90.7% 90.7%
3313119 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 38.0 4.33e-01 94.4% 86.3%
861 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.58 46.0 4.39e-01 85.2% 100.0%
3959863 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 46.0 4.22e-01 85.2% 84.8%
3285271 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 47.0 4.22e-01 85.2% 84.8%
3953711 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 46.0 4.19e-01 85.2% 84.8%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.33e-01 91.7% 91.3%
3393360 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 37.0 3.69e-01 94.4% 62.6%
4928245 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 45.0 4.15e-01 84.3% 82.6%
859 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.56 43.0 4.17e-01 82.4% 100.0%
3282239 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 44.0 4.09e-01 85.2% 87.4%
3278890 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 43.0 3.91e-01 84.3% 81.3%
4849080 5084.1.1.44 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HphA_C 0.54 38.0 4.24e-01 93.5% 98.8%
5038407 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 43.0 3.85e-01 85.2% 82.7%
3471722 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 47.0 4.61e-01 95.4% 99.1%
3831652 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.53 42.0 3.76e-01 87.0% 84.2%
3672445 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.37e-01 85.2% 55.2%
3399367 9.2.1.5 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 0.52 41.0 4.38e-01 95.4% 100.0%
4929661 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.51 44.0 3.92e-01 97.2% 91.3%
3449040 9.1.1.34 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.51 42.0 3.68e-01 93.5% 76.0%
3304602 4.1.1.427 beta barrels › SH3 › SH3 › SH3 › F-box 0.50 38.0 4.09e-01 97.2% 90.5%
3937047 9.1.1.55 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.50 44.0 4.28e-01 96.3% 95.8%
D2 high residues 192-257
PDB
D3 high residues 266-367
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.59 45.0 3.79e-01 79.4% 98.8%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 4.05e-01 100.0% 63.4%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.24e-01 97.1% 71.8%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 46.0 3.98e-01 96.1% 88.6%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 4.08e-01 96.1% 97.4%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.34e-01 97.1% 46.4%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.53 39.0 3.57e-01 99.0% 57.7%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.53 39.0 3.72e-01 94.1% 66.7%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 34.0 3.40e-01 100.0% 61.9%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 4.17e-01 98.0% 76.1%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 45.0 4.21e-01 95.1% 85.3%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 45.0 3.24e-01 98.0% 98.2%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.51 28.0 3.26e-01 95.1% 76.5%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 43.0 3.53e-01 97.1% 99.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 44.0 4.33e-01 98.0% 95.6%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.68e-01 97.1% 64.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4636309 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.61 53.0 4.21e-01 97.1% 100.0%
3838035 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.61 52.0 4.23e-01 96.1% 92.5%
3838622 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.59 52.0 4.06e-01 96.1% 98.6%
5043413 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.54 47.0 4.58e-01 97.1% 88.2%
3653947 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.53 45.0 3.80e-01 95.1% 87.2%
3399365 9.2.1.10 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7044 0.53 47.0 4.60e-01 100.0% 97.3%
3909292 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.53 42.0 3.43e-01 87.3% 78.5%
3217858 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.52 41.0 3.43e-01 86.3% 75.8%
3553885 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.52 41.0 3.77e-01 100.0% 63.7%
4408604 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.52 37.0 2.79e-01 95.1% 30.4%
3686517 220.1.1.112 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.52 42.0 3.64e-01 89.2% 75.2%
3392597 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 40.0 3.73e-01 85.3% 70.4%
3251788 9.1.1.37 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.51 44.0 3.80e-01 95.1% 98.2%
3267359 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 3.64e-01 86.3% 66.9%
3510425 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 39.0 3.40e-01 80.4% 65.8%
3279448 9.1.1.17 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.51 44.0 4.05e-01 96.1% 83.5%
3510664 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 40.0 3.63e-01 85.3% 65.0%
3934185 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 42.0 3.88e-01 94.1% 100.0%
3399941 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 45.0 4.30e-01 100.0% 95.8%
5031433 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 37.0 3.74e-01 86.3% 78.0%