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LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00207

Bact-Vir

LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00207

Identity

Kingdom:
phage

Quality

59.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-144
PDB
Domain cluster: rep: BML_coassembly_scaffold_69_prodigal-single.1__X__X__00311__D70-122
D2 high residues 164-209
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.71 48.0 4.58e-01 71.7% 100.0%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.15e-01 76.1% 53.4%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.60 42.0 2.60e-01 76.1% 21.7%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 43.0 3.14e-01 84.8% 30.7%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.25e-01 80.4% 61.0%
4v19I01 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.58 48.0 4.56e-01 100.0% 91.2%
1l1lA03 3.90.1390.10 Alpha Beta › Alpha-Beta Complex › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 › b-12 dependent (class ii) ribonucleotide reductase, chain A, domain 3 0.57 48.0 3.93e-01 100.0% 78.7%
3a43B02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 38.0 4.21e-01 73.9% 100.0%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 43.0 2.85e-01 95.7% 97.0%
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.52 33.0 3.23e-01 87.0% 54.5%
2khoA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 38.0 2.69e-01 87.0% 84.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.69 46.0 3.96e-01 76.1% 42.7%
4518520 375.1.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.64 45.0 4.95e-01 78.3% 100.0%
4546356 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 3.78e-01 84.8% 47.1%
4344487 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 45.0 3.06e-01 82.6% 23.6%
5042462 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 44.0 3.04e-01 82.6% 23.6%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 44.0 3.04e-01 82.6% 23.6%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 44.0 3.02e-01 82.6% 22.9%
4456198 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 2.95e-01 82.6% 21.1%
5057952 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.59 48.0 4.36e-01 95.7% 69.2%
4478999 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.58 43.0 2.96e-01 82.6% 22.5%
4938827 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.57 50.0 3.93e-01 100.0% 81.8%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 45.0 3.18e-01 93.5% 50.6%
4220222 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.57 45.0 4.39e-01 100.0% 90.9%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 2.91e-01 82.6% 22.9%
4467359 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 45.0 3.12e-01 91.3% 25.3%
5056653 375.1.1.64 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.57 45.0 4.59e-01 95.7% 97.7%
5054122 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 42.0 3.10e-01 93.5% 93.8%
4466102 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 43.0 3.06e-01 93.5% 50.6%
4433999 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 4.11e-01 78.3% 97.1%
4329890 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 41.0 2.95e-01 84.8% 26.0%
4646072 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 40.0 2.77e-01 82.6% 22.9%
5080684 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 43.0 3.11e-01 93.5% 54.2%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.54 47.0 4.42e-01 100.0% 81.8%
4945555 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.77e-01 71.7% 100.0%
3176891 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.51 42.0 3.10e-01 95.7% 85.9%
D3 medium residues 242-309
PDB