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LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00216
Bact-VirLacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00216
Identity
- Kingdom:
- phage
Quality
79.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-80
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n7vA01 | 2.105.10.10 | Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller | 0.68 | 46.0 | 3.52e-01 | 70.5% | 88.7% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.67 | 46.0 | 3.77e-01 | 71.8% | 88.4% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.67 | 48.0 | 3.41e-01 | 75.6% | 77.2% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.66 | 47.0 | 3.42e-01 | 75.6% | 85.3% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.65 | 48.0 | 3.84e-01 | 78.2% | 90.7% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.64 | 46.0 | 3.82e-01 | 75.6% | 88.6% |
| 2htaA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.64 | 52.0 | 3.49e-01 | 94.9% | 23.6% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.63 | 50.0 | 4.06e-01 | 84.6% | 84.8% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 44.0 | 3.62e-01 | 71.8% | 50.0% |
| 3n0qA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.63 | 47.0 | 3.19e-01 | 79.5% | 54.6% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 48.0 | 3.86e-01 | 83.3% | 92.4% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.62 | 46.0 | 4.02e-01 | 78.2% | 58.0% |
| 2xepB02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.62 | 45.0 | 3.19e-01 | 78.2% | 80.1% |
| 3v98A03 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 47.0 | 4.18e-01 | 83.3% | 100.0% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 45.0 | 3.81e-01 | 78.2% | 51.1% |
| 2f4wB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.60 | 45.0 | 3.62e-01 | 79.5% | 63.2% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 42.0 | 3.53e-01 | 73.1% | 54.3% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 42.0 | 2.65e-01 | 74.4% | 33.3% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 47.0 | 3.68e-01 | 84.6% | 81.4% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.59 | 48.0 | 4.02e-01 | 89.7% | 88.6% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 43.0 | 2.88e-01 | 76.9% | 87.7% |
| 3v39A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 43.0 | 3.15e-01 | 79.5% | 81.2% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 41.0 | 3.56e-01 | 74.4% | 51.9% |
| 2ex2A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 42.0 | 3.09e-01 | 79.5% | 84.1% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.58 | 44.0 | 4.38e-01 | 82.1% | 82.1% |
| 2b1xA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.58 | 42.0 | 2.79e-01 | 75.6% | 52.7% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 44.0 | 3.08e-01 | 83.3% | 83.0% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 39.0 | 3.46e-01 | 70.5% | 58.5% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.57 | 48.0 | 4.25e-01 | 92.3% | 67.0% |
| 1jovA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 41.0 | 2.90e-01 | 91.0% | 23.4% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 39.0 | 2.61e-01 | 74.4% | 82.5% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 41.0 | 2.83e-01 | 80.8% | 93.8% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 43.0 | 3.35e-01 | 85.9% | 78.3% |
| 2ichA02 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.55 | 39.0 | 3.39e-01 | 75.6% | 89.2% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 42.0 | 2.77e-01 | 82.1% | 85.1% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 38.0 | 4.17e-01 | 71.8% | 88.9% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 42.0 | 3.48e-01 | 83.3% | 81.7% |
| 1zs8A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 39.0 | 3.08e-01 | 78.2% | 77.8% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 47.0 | 3.80e-01 | 98.7% | 74.5% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 38.0 | 2.82e-01 | 76.9% | 84.6% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.44e-01 | 94.9% | 75.4% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 39.0 | 3.59e-01 | 84.6% | 94.4% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 39.0 | 3.52e-01 | 82.1% | 62.0% |
| 4mjdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.39e-01 | 80.8% | 63.7% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.39e-01 | 80.8% | 63.4% |
| 1x23B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 39.0 | 3.24e-01 | 87.2% | 67.8% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 39.0 | 2.70e-01 | 85.9% | 43.0% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 37.0 | 2.43e-01 | 83.3% | 65.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988150 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.68 | 51.0 | 4.65e-01 | 79.5% | 89.5% |
| 5072002 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.68 | 49.0 | 4.11e-01 | 76.9% | 62.2% |
| 5047768 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.68 | 50.0 | 4.09e-01 | 76.9% | 56.5% |
| 4928046 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 47.0 | 4.09e-01 | 75.6% | 57.5% |
| 3087264 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.65 | 45.0 | 4.15e-01 | 73.1% | 64.8% |
| 3278560 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 48.0 | 4.16e-01 | 79.5% | 78.0% |
| 5071962 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 47.0 | 3.81e-01 | 76.9% | 47.6% |
| 3277661 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.63 | 44.0 | 3.99e-01 | 76.9% | 53.3% |
| 3973879 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.63 | 44.0 | 3.51e-01 | 71.8% | 41.3% |
| 5047088 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.63 | 43.0 | 3.14e-01 | 70.5% | 100.0% |
| 5053632 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 46.0 | 4.00e-01 | 78.2% | 60.8% |
| 3512529 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.63 | 48.0 | 3.77e-01 | 80.8% | 85.0% |
| 4009799 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.63 | 48.0 | 4.35e-01 | 82.1% | 63.8% |
| 3866695 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.62 | 48.0 | 3.83e-01 | 82.1% | 81.3% |
| None | — | 0.62 | 46.0 | 3.06e-01 | 79.5% | 35.5% | |
| 5025792 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.62 | 50.0 | 4.46e-01 | 89.7% | 89.6% |
| 3959060 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.62 | 45.0 | 3.45e-01 | 75.6% | 84.4% |
| 3286654 | 223.1.1.37 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N | 0.61 | 44.0 | 4.08e-01 | 75.6% | 66.0% |
| 4031135 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.59 | 43.0 | 4.20e-01 | 75.6% | 91.8% |
| 3698130 | 216.1.1.14 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med1 | 0.59 | 48.0 | 4.41e-01 | 89.7% | 97.1% |
| 2321284 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 42.0 | 3.76e-01 | 75.6% | 88.6% |
| 4464658 | 274.1.1.59 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG | 0.58 | 45.0 | 3.97e-01 | 83.3% | 68.4% |
| 1227254 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.58 | 50.0 | 3.39e-01 | 100.0% | 98.1% |
| 3239005 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 43.0 | 2.72e-01 | 89.7% | 15.3% |
| 3282531 | 4019.1.1.6 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.58 | 42.0 | 3.03e-01 | 79.5% | 89.2% |
| 4928052 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 43.0 | 2.89e-01 | 82.1% | 80.6% |
| 4978995 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.57 | 44.0 | 3.07e-01 | 82.1% | 80.0% |
| 4948601 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.57 | 40.0 | 2.98e-01 | 74.4% | 40.1% |
| 3729944 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.57 | 49.0 | 4.41e-01 | 97.4% | 100.0% |
| 355233 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.57 | 43.0 | 4.31e-01 | 82.1% | 82.5% |
| 3601982 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 43.0 | 2.75e-01 | 82.1% | 65.2% |
| 2012 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.56 | 42.0 | 2.90e-01 | 91.0% | 23.4% |
| 168139 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.53 | 40.0 | 2.82e-01 | 83.3% | 80.5% |
| 3956719 | 4252.1.1.14 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30556 | 0.53 | 40.0 | 3.21e-01 | 85.9% | 77.1% |
| 4981911 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 40.0 | 2.86e-01 | 82.1% | 63.7% |
| 4024649 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 41.0 | 4.00e-01 | 89.7% | 84.4% |