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LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00247

Bact-Vir

LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00247

Identity

Kingdom:
phage

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-103
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.69 40.0 4.16e-01 74.2% 60.2%
2le1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 50.0 4.43e-01 97.9% 78.1%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 43.0 3.56e-01 77.3% 80.3%
3hkmB00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 49.0 3.79e-01 91.8% 98.6%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 49.0 4.04e-01 91.8% 73.7%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 4.40e-01 95.9% 81.6%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 37.0 3.11e-01 77.3% 38.7%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.95e-01 91.8% 69.3%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 47.0 4.04e-01 92.8% 83.6%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.56 40.0 3.63e-01 76.3% 56.8%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.56 45.0 4.08e-01 89.7% 72.4%
4a1nA01 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.55 50.0 3.74e-01 100.0% 91.3%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.36e-01 88.7% 53.9%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 41.0 3.69e-01 85.6% 83.2%
2wsaA00 3.40.630.170 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.53 47.0 3.10e-01 100.0% 28.2%
1ffvB02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 36.0 3.27e-01 88.7% 49.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3302390 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 46.0 4.51e-01 99.0% 72.4%
4030396 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 50.0 4.61e-01 90.7% 77.7%
2028017 881.6.1.1 ↗ a+b three layers › Mog1p/PsbP-like › FrpD › FrpD › FrpC 0.61 47.0 3.65e-01 83.5% 95.1%
4010148 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 53.0 4.30e-01 100.0% 92.2%
3764453 304.24.1.33 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF4708 0.57 42.0 3.47e-01 100.0% 41.6%
5004893 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.56 41.0 2.79e-01 77.3% 37.0%
5014272 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 33.0 3.82e-01 76.3% 85.7%
3230977 4099.1.1.48 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Rgr-1_C 0.53 43.0 3.91e-01 87.6% 75.4%
3622016 2484.5.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.53 37.0 3.64e-01 86.6% 67.6%
3739339 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.53 35.0 3.63e-01 95.9% 72.2%
3208239 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.52 44.0 2.91e-01 97.9% 24.6%
4061424 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.52 35.0 3.44e-01 95.9% 63.8%
3270020 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 40.0 3.68e-01 84.5% 66.9%
3783938 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.51 35.0 3.44e-01 86.6% 64.4%
3738375 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 36.0 2.36e-01 75.3% 27.4%
3593650 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.50 38.0 3.49e-01 80.4% 65.4%
3393004 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.50 39.0 3.31e-01 84.5% 51.5%