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LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00256
Bact-VirLacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00256
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-107
Domain cluster:
rep: IMGVR_UViG_3300022888_000545-3300022888-Ga0233428_10079506__D3-91
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.76 | 40.0 | 4.75e-01 | 84.8% | 74.6% |
| 3el6A00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.70 | 54.0 | 3.81e-01 | 81.5% | 44.3% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 43.0 | 4.94e-01 | 100.0% | 87.9% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 53.0 | 4.58e-01 | 82.6% | 77.3% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 51.0 | 4.22e-01 | 79.3% | 100.0% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.66 | 52.0 | 4.56e-01 | 83.7% | 97.0% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.65 | 33.0 | 4.06e-01 | 89.1% | 77.2% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.62 | 53.0 | 4.55e-01 | 94.6% | 67.8% |
| 3brcA02 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.61 | 51.0 | 4.74e-01 | 94.6% | 93.3% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.60 | 37.0 | 4.14e-01 | 91.3% | 83.3% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 3.87e-01 | 70.7% | 82.5% |
| 8adlB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 46.0 | 3.20e-01 | 83.7% | 92.8% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.59 | 43.0 | 4.51e-01 | 76.1% | 100.0% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.59 | 45.0 | 3.18e-01 | 83.7% | 96.8% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 49.0 | 4.73e-01 | 92.4% | 93.3% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 46.0 | 4.03e-01 | 88.0% | 77.9% |
| 3gkmA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 52.0 | 4.32e-01 | 98.9% | 74.5% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.57 | 48.0 | 3.90e-01 | 91.3% | 47.5% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 49.0 | 3.42e-01 | 97.8% | 95.7% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 45.0 | 3.65e-01 | 93.5% | 44.1% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 51.0 | 4.43e-01 | 98.9% | 76.1% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 47.0 | 4.16e-01 | 92.4% | 67.4% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 47.0 | 4.58e-01 | 92.4% | 93.2% |
| 4hjhA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.55 | 45.0 | 4.41e-01 | 90.2% | 83.2% |
| 1fnoA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 47.0 | 3.40e-01 | 100.0% | 74.2% |
| 5g56A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 40.0 | 3.61e-01 | 77.2% | 100.0% |
| 3ei3A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 3.13e-01 | 94.6% | 45.5% |
| 2dkhA03 | 3.40.30.20 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain | 0.54 | 48.0 | 3.67e-01 | 100.0% | 61.5% |
| 2p39A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 39.0 | 3.39e-01 | 77.2% | 88.7% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.53 | 40.0 | 3.98e-01 | 83.7% | 77.7% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 42.0 | 3.13e-01 | 87.0% | 48.2% |
| 2a5zA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.42e-01 | 95.7% | 82.4% |
| 3dasA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 45.0 | 3.10e-01 | 96.7% | 58.1% |
| 2l8oA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 41.0 | 3.59e-01 | 85.9% | 81.2% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 42.0 | 4.00e-01 | 92.4% | 73.8% |
| 6gitA02 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 42.0 | 2.87e-01 | 88.0% | 97.4% |
| 2i0rA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.88e-01 | 89.1% | 97.7% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 41.0 | 4.01e-01 | 87.0% | 85.0% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.51 | 39.0 | 3.42e-01 | 93.5% | 54.3% |
| 4w82A01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.51 | 35.0 | 3.06e-01 | 71.7% | 83.9% |
| 2vseA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 36.0 | 3.23e-01 | 77.2% | 85.9% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.50 | 45.0 | 3.49e-01 | 100.0% | 67.1% |
| 3madA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 44.0 | 3.95e-01 | 100.0% | 79.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952333 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.77 | 44.0 | 5.22e-01 | 89.1% | 81.5% |
| 4031519 | 3425.1.1.1 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH N-terminal domain › YycH N-terminal domain › YycH | 0.77 | 53.0 | 4.47e-01 | 70.7% | 89.7% |
| 3239519 | 4099.1.1.29 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 | 0.72 | 64.0 | 5.48e-01 | 97.8% | 73.8% |
| 3727451 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.70 | 60.0 | 6.01e-01 | 95.7% | 100.0% |
| 5053933 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.69 | 41.0 | 4.86e-01 | 90.2% | 86.2% |
| 3980136 | 243.3.1.21 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YsaB | 0.67 | 40.0 | 4.41e-01 | 84.8% | 73.3% |
| 5000990 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.66 | 58.0 | 4.89e-01 | 97.8% | 80.6% |
| 4057824 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 49.0 | 4.38e-01 | 78.3% | 76.6% |
| 3585414 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.65 | 58.0 | 5.45e-01 | 96.7% | 89.1% |
| 3192378 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.64 | 52.0 | 5.03e-01 | 90.2% | 99.0% |
| 5055761 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.64 | 54.0 | 4.80e-01 | 96.7% | 92.9% |
| 4939790 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.64 | 50.0 | 3.69e-01 | 82.6% | 87.6% |
| 3783252 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 44.0 | 2.94e-01 | 73.9% | 32.9% |
| 5011158 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.62 | 53.0 | 4.56e-01 | 92.4% | 77.1% |
| 4877157 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.62 | 53.0 | 3.66e-01 | 93.5% | 31.3% |
| 3918436 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.62 | 51.0 | 3.39e-01 | 88.0% | 74.0% |
| 4003932 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.62 | 53.0 | 4.85e-01 | 92.4% | 96.7% |
| 3592181 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.62 | 53.0 | 4.65e-01 | 92.4% | 80.0% |
| 5047051 | 5.1.4.663 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP | 0.61 | 52.0 | 3.45e-01 | 92.4% | 91.1% |
| 3263745 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.61 | 44.0 | 3.67e-01 | 76.1% | 86.6% |
| 3972685 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.60 | 48.0 | 4.13e-01 | 87.0% | 82.7% |
| 3602008 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 44.0 | 2.61e-01 | 78.3% | 16.1% |
| 3964888 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 45.0 | 3.45e-01 | 80.4% | 71.9% |
| 3289957 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.59 | 47.0 | 4.14e-01 | 87.0% | 85.0% |
| 6329 | 331.3.1.10 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL | 0.58 | 46.0 | 4.03e-01 | 88.0% | 77.4% |
| 3228032 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.57 | 46.0 | 4.34e-01 | 85.9% | 100.0% |
| 3420430 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.57 | 45.0 | 3.99e-01 | 84.8% | 85.2% |
| 5012828 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.56 | 47.0 | 3.09e-01 | 90.2% | 82.9% |
| 4334199 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.56 | 43.0 | 3.90e-01 | 81.5% | 84.8% |
| 310184 | 5.1.4.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Me-amine-dh_H | 0.56 | 46.0 | 3.12e-01 | 91.3% | 63.0% |
| 5054384 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.55 | 37.0 | 4.06e-01 | 89.1% | 91.4% |
| 5041549 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 3.34e-01 | 93.5% | 55.3% |
| 4370161 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.55 | 44.0 | 3.66e-01 | 85.9% | 72.5% |
| 4965832 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.55 | 44.0 | 3.59e-01 | 87.0% | 100.0% |
| 3627380 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 3.12e-01 | 93.5% | 67.1% |
| 4031999 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 39.0 | 4.05e-01 | 78.3% | 85.9% |
| 3929502 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 42.0 | 4.26e-01 | 84.8% | 94.7% |
| 5057301 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 43.0 | 3.27e-01 | 93.5% | 55.7% |
| 3940470 | 5.1.4.320 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 | 0.52 | 44.0 | 2.89e-01 | 91.3% | 60.3% |
| 2649512 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.52 | 41.0 | 3.33e-01 | 87.0% | 49.7% |
| 5076337 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 32.0 | 3.77e-01 | 85.9% | 96.7% |
| 4944026 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 32.0 | 3.83e-01 | 85.9% | 93.8% |