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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00081

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00081

Identity

Kingdom:
phage

Quality

95.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 47.0 3.65e-01 76.2% 95.9%
2clqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 48.0 4.32e-01 77.8% 98.8%
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 44.0 3.58e-01 74.6% 90.6%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 44.0 3.77e-01 73.0% 80.6%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.63 48.0 4.65e-01 85.7% 73.2%
3uiuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 43.0 3.77e-01 73.0% 88.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 45.0 4.73e-01 82.5% 87.3%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.11e-01 95.2% 48.3%
4ks7A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 45.0 3.86e-01 77.8% 80.6%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.61 45.0 3.67e-01 79.4% 81.0%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 52.0 3.28e-01 96.8% 39.5%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 3.86e-01 84.1% 61.2%
5d9hA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 3.94e-01 77.8% 90.9%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 47.0 4.15e-01 84.1% 93.3%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 3.84e-01 77.8% 86.0%
4c8bA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 45.0 2.98e-01 84.1% 53.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 40.0 4.40e-01 82.5% 88.5%
6td3B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 45.0 3.81e-01 84.1% 90.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.79e-01 84.1% 61.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.91e-01 84.1% 77.2%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.10e-01 100.0% 32.3%
4m69A00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 42.0 2.79e-01 82.5% 49.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 49.0 3.90e-01 93.7% 82.6%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.57 40.0 3.48e-01 76.2% 66.7%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.15e-01 100.0% 36.4%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.86e-01 82.5% 78.7%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 43.0 3.19e-01 84.1% 84.7%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.56 48.0 2.95e-01 100.0% 37.9%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.39e-01 85.7% 59.2%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 50.0 3.09e-01 100.0% 45.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 43.0 4.08e-01 84.1% 85.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 3.86e-01 82.5% 65.1%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.23e-01 76.2% 92.2%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 3.90e-01 88.9% 98.9%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.48e-01 76.2% 73.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.19e-01 84.1% 84.1%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 37.0 4.01e-01 82.5% 85.2%
3uqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 46.0 4.02e-01 93.7% 96.8%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.54 43.0 3.39e-01 95.2% 66.2%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 2.69e-01 81.0% 47.4%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.53 36.0 2.77e-01 71.4% 93.7%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.45e-01 81.0% 68.8%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 3.17e-01 81.0% 95.1%
2f9zC00 3.30.1330.200 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.52 40.0 3.10e-01 87.3% 98.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.54e-01 100.0% 73.1%
4eqsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.86e-01 81.0% 44.7%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.60e-01 81.0% 37.6%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.82e-01 76.2% 83.9%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.75e-01 100.0% 29.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 40.0 3.47e-01 90.5% 96.3%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.51 38.0 3.55e-01 84.1% 79.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626927 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 40.0 4.29e-01 79.4% 67.3%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.69e-01 82.5% 80.0%
3198165 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 55.0 3.52e-01 100.0% 92.4%
4927858 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.59e-01 82.5% 83.6%
3999057 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 47.0 2.97e-01 82.5% 42.4%
5038362 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.61 42.0 4.35e-01 73.0% 78.3%
3911531 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.61 47.0 3.01e-01 82.5% 47.7%
4011771 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 52.0 2.93e-01 98.4% 17.8%
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 43.0 3.51e-01 82.5% 41.7%
2085330 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 45.0 3.40e-01 82.5% 93.7%
3734423 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 51.0 3.12e-01 98.4% 32.6%
3618512 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 46.0 3.08e-01 85.7% 34.4%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.58 45.0 4.24e-01 82.5% 88.0%
3894328 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.58 49.0 3.55e-01 100.0% 35.0%
3173920 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 43.0 2.72e-01 81.0% 19.4%
3994699 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.82e-01 85.7% 26.5%
3934912 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.11e-01 76.2% 35.5%
5031001 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 42.0 3.22e-01 81.0% 67.1%
3301560 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 49.0 3.08e-01 98.4% 34.9%
4479376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 40.0 3.34e-01 76.2% 62.6%
3319421 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 41.0 4.41e-01 82.5% 98.0%
4436096 5.1.5.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nup88 0.56 46.0 2.82e-01 95.2% 37.4%
3317787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.34e-01 84.1% 98.0%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.55 38.0 3.36e-01 76.2% 66.7%
4336238 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.55 38.0 3.41e-01 76.2% 64.0%
5054046 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.54 35.0 3.62e-01 77.8% 70.0%
4970357 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.54 40.0 2.35e-01 81.0% 10.4%
4179811 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 34.0 3.91e-01 85.7% 100.0%
4980908 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 40.0 3.06e-01 81.0% 41.9%
3367314 5.1.4.510 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.54 47.0 3.09e-01 100.0% 36.1%
5022332 3349.1.1.1 a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2 0.54 38.0 2.50e-01 76.2% 49.7%
2998372 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 35.0 3.72e-01 90.5% 81.1%
4491369 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.53 40.0 2.59e-01 81.0% 33.4%
4030033 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 36.0 3.51e-01 88.9% 61.3%
3860062 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.89e-01 96.8% 41.4%
4982262 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.53 37.0 3.54e-01 74.6% 62.7%
3684934 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.95e-01 88.9% 34.3%
3932473 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.84e-01 100.0% 32.3%
3249318 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.53 38.0 2.51e-01 79.4% 34.3%
3818723 5.1.8.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › FBA_3 0.52 42.0 3.12e-01 92.1% 78.9%
4116769 375.1.1.38 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.52 41.0 3.46e-01 87.3% 78.2%
3363058 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.52 40.0 2.79e-01 85.7% 60.0%
4651813 7515.1.1.5 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.52 43.0 2.63e-01 100.0% 81.2%
3933561 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.11e-01 74.6% 79.0%
None 0.51 38.0 2.47e-01 81.0% 44.9%
None 0.51 43.0 2.78e-01 96.8% 29.8%
3586270 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.64e-01 100.0% 31.3%
3518934 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 43.0 2.77e-01 95.2% 34.0%
3961918 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.50 37.0 2.46e-01 81.0% 68.4%
4002532 5.1.2.30 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › RAB3GAP2_N 0.50 44.0 3.34e-01 100.0% 52.9%
3398127 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.50 41.0 2.58e-01 95.2% 41.7%
3597599 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.50 39.0 3.48e-01 92.1% 70.0%