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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00113
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00113
Identity
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-81
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d9hA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.67 | 38.0 | 3.40e-01 | 75.0% | 39.7% |
| 2f4mA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 42.0 | 4.38e-01 | 73.2% | 78.0% |
| 3i87A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.61 | 49.0 | 4.17e-01 | 92.9% | 86.7% |
| 7vbnL01 | 3.30.160.190 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain | 0.59 | 49.0 | 4.12e-01 | 92.9% | 69.5% |
| 1kw3B01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 36.0 | 2.80e-01 | 85.7% | 28.8% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.55 | 44.0 | 3.56e-01 | 96.4% | 44.1% |
| 3p01A02 | 3.30.450.340 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 39.0 | 3.37e-01 | 78.6% | 52.6% |
| 3vb0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 37.0 | 2.90e-01 | 80.4% | 31.8% |
| 4oloB00 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.53 | 43.0 | 3.82e-01 | 92.9% | 84.5% |
| 2ehzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 34.0 | 2.69e-01 | 85.7% | 28.9% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.51 | 42.0 | 3.14e-01 | 98.2% | 77.0% |
| 1xy7B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 34.0 | 2.78e-01 | 80.4% | 31.1% |
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.51 | 42.0 | 3.33e-01 | 96.4% | 64.6% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 2.81e-01 | 100.0% | 24.1% |
| 1p0hA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 2.65e-01 | 92.9% | 41.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3228878 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.71 | 48.0 | 4.86e-01 | 96.4% | 70.9% |
| 3743354 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.70 | 54.0 | 4.51e-01 | 92.9% | 48.0% |
| 1566733 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 53.0 | 4.29e-01 | 92.9% | 42.5% |
| 4935732 | 2008.1.1.165 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MjaI | 0.60 | 52.0 | 4.20e-01 | 100.0% | 88.2% |
| 3238003 | 241.4.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom | 0.59 | 50.0 | 3.82e-01 | 100.0% | 40.7% |
| 4037779 | 241.4.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 | 0.59 | 49.0 | 4.17e-01 | 98.2% | 57.0% |
| 3591922 | 7.1.1.15 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › DUF7759 | 0.59 | 46.0 | 3.87e-01 | 94.6% | 69.1% |
| 3289995 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 46.0 | 3.79e-01 | 92.9% | 46.4% |
| 3680932 | 220.1.1.180 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 | 0.56 | 45.0 | 3.67e-01 | 92.9% | 60.9% |
| 3846390 | 2008.1.1.84 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector | 0.52 | 41.0 | 2.98e-01 | 100.0% | 52.6% |
| 4212008 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.51 | 41.0 | 2.59e-01 | 94.6% | 15.8% |
| 4013578 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 37.0 | 3.89e-01 | 76.8% | 100.0% |
| None | — | 0.51 | 35.0 | 2.71e-01 | 78.6% | 30.4% | |
| 4988734 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.50 | 41.0 | 3.37e-01 | 98.2% | 93.2% |