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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00115

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00115

Identity

Kingdom:
phage

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-100
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.65 30.0 4.38e-01 78.6% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.29e-01 72.4% 67.7%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 36.0 3.32e-01 75.5% 46.4%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.59 40.0 4.51e-01 89.8% 90.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 27.0 3.36e-01 79.6% 72.6%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.59e-01 78.6% 91.3%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 40.0 3.08e-01 75.5% 96.2%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.45e-01 78.6% 86.6%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 33.0 3.08e-01 83.7% 48.7%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 42.0 3.54e-01 82.7% 66.7%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 49.0 3.93e-01 99.0% 52.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.48e-01 82.7% 81.5%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.54 32.0 3.35e-01 76.5% 63.0%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.62e-01 81.6% 90.2%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.55e-01 77.6% 61.9%
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.53 38.0 2.96e-01 74.5% 37.1%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.43e-01 77.6% 91.2%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.42e-01 77.6% 90.6%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 39.0 2.76e-01 80.6% 38.8%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.43e-01 79.6% 56.5%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 45.0 3.03e-01 94.9% 62.7%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.51 35.0 3.37e-01 79.6% 60.0%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.38e-01 79.6% 88.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 46.0 4.12e-01 78.6% 78.5%
3602156 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 41.0 3.55e-01 70.4% 58.1%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.34e-01 71.4% 94.3%
3706223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.41e-01 84.7% 85.7%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 45.0 4.33e-01 82.7% 86.4%
3595283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.33e-01 86.7% 83.5%
3921418 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.56 44.0 4.63e-01 82.7% 98.8%
4961941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 39.0 2.56e-01 71.4% 61.7%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 49.0 4.53e-01 100.0% 80.0%
4887870 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 40.0 3.45e-01 79.6% 81.2%
3706101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 3.60e-01 99.0% 43.3%
4980234 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 40.0 3.32e-01 80.6% 45.9%
4671100 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 39.0 3.40e-01 78.6% 89.0%
4445317 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 38.0 3.32e-01 77.6% 87.1%
2141735 219.1.1.69 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.51 38.0 3.05e-01 77.6% 39.5%
4966168 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.83e-01 86.7% 67.8%