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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00149

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00149

Identity

Kingdom:
phage

Quality

83.5 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-136
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00113__D6-111
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20475.4 best DUF6717 28.8 2.00e-06 99.2% 93.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 30.0 3.99e-01 70.1% 95.1%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 27.0 3.43e-01 100.0% 70.3%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 35.0 3.84e-01 100.0% 74.5%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 25.0 3.22e-01 100.0% 74.3%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.52 27.0 3.61e-01 99.2% 98.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5035557 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 27.0 3.96e-01 87.4% 90.0%
4331761 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 41.0 4.30e-01 70.1% 95.7%
4230632 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 39.0 3.93e-01 70.1% 92.5%
3655173 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.56 23.0 3.49e-01 87.4% 94.0%
4047281 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 39.0 4.20e-01 70.1% 94.3%
3979181 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 38.0 3.87e-01 70.1% 81.6%
4153967 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 38.0 3.99e-01 70.9% 92.9%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 37.0 3.83e-01 70.1% 95.0%
3491593 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 33.0 3.48e-01 100.0% 67.8%
3285086 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.53 25.0 3.08e-01 100.0% 69.3%
3597196 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 32.0 3.67e-01 90.6% 80.0%
4550958 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 40.0 4.22e-01 80.3% 92.0%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.51 32.0 3.44e-01 90.6% 73.3%
4103327 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 40.0 4.06e-01 81.9% 94.3%
3605376 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.51 33.0 3.67e-01 92.1% 85.3%
4890564 101.1.2.869 ↗ alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.51 28.0 3.43e-01 90.6% 85.2%
4079201 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 39.0 4.18e-01 92.1% 94.5%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.50 30.0 3.47e-01 89.0% 82.2%
5010778 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 37.0 4.09e-01 79.5% 93.3%