←Back to structures
LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00202
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00202
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-63
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07596.17 best | SBP_bac_10 | 51.7 | 1.90e-13 | 68.0% | 12.7% |
D2
medium
residues 64-346
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07596.17 best | SBP_bac_10 | 92.0 | 9.30e-26 | 93.6% | 84.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 13.0 | 3.12e-01 | 90.1% | 98.2% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 12.0 | 2.38e-01 | 82.3% | 62.5% |
| 5wb2B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 13.0 | 2.66e-01 | 74.9% | 80.8% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 14.0 | 2.86e-01 | 77.4% | 93.9% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 14.0 | 2.85e-01 | 76.3% | 94.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581368 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.62 | 10.0 | 2.98e-01 | 82.7% | 92.3% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.62 | 18.0 | 3.15e-01 | 98.2% | 76.1% |
| 3673317 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 13.0 | 3.18e-01 | 73.5% | 94.5% |
| 3299797 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.57 | 14.0 | 3.13e-01 | 78.8% | 96.7% |
| 3715045 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.53 | 13.0 | 2.83e-01 | 75.6% | 87.1% |
| 1837476 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.51 | 15.0 | 2.85e-01 | 88.0% | 97.0% |