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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00208

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00208

Identity

Kingdom:
phage

Quality

96.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-217
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q7sA00 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.78 75.0 6.80e-01 100.0% 97.0%
3a9lA00 3.40.630.100 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Poly-gamma-glutamate hydrolase, zinc-binding motif 0.77 64.0 6.59e-01 100.0% 88.9%
2odfB01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.77 74.0 7.07e-01 100.0% 98.3%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.75 37.0 5.11e-01 96.7% 92.7%
3k2kA02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.73 70.0 6.42e-01 100.0% 87.5%
3io1A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.72 60.0 5.38e-01 100.0% 65.5%
1xovA01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.70 56.0 6.10e-01 96.7% 98.9%
4zi6C02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.68 64.0 5.57e-01 100.0% 81.7%
2pe3D01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.67 60.0 5.67e-01 100.0% 80.5%
5jgfA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.67 62.0 5.43e-01 100.0% 78.4%
3vsjA00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.65 49.0 4.54e-01 96.7% 61.1%
3o1iC01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 39.0 4.73e-01 97.2% 92.1%
2qu7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 36.0 4.54e-01 97.2% 90.7%
3d02A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 37.0 4.37e-01 97.2% 81.6%
5hsgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 36.0 4.55e-01 98.6% 93.6%
2vk2A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 37.0 4.57e-01 97.2% 92.4%
1z2lA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 59.0 5.24e-01 100.0% 79.4%
4uc0A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.63 59.0 5.58e-01 99.1% 98.0%
3kjxA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 36.0 4.44e-01 97.2% 89.5%
3vsjD00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.62 50.0 4.44e-01 96.7% 59.2%
3vr0A00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.62 58.0 5.57e-01 99.1% 88.5%
2xrfC00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.62 58.0 5.26e-01 100.0% 92.7%
4kvfA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 37.0 4.21e-01 97.7% 76.9%
3kl9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 58.0 5.40e-01 100.0% 87.9%
4kqcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 38.0 4.29e-01 97.7% 79.9%
1t8sA02 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 55.0 4.90e-01 100.0% 88.4%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 55.0 5.27e-01 99.5% 95.5%
4xxhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 35.0 4.17e-01 98.1% 89.9%
2f4nA01 3.40.50.10790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal 0.56 36.0 4.18e-01 97.2% 90.5%
4bl7A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 22.0 3.01e-01 93.9% 71.8%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 36.0 4.19e-01 98.1% 95.5%
3c5cB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 4.44e-01 97.7% 99.4%
1dpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 35.0 3.91e-01 85.5% 84.0%
1ydgA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 44.0 4.60e-01 97.7% 97.0%
2aeaA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 46.0 4.41e-01 98.1% 98.8%
4e5vB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.50 45.0 4.15e-01 98.1% 91.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998365 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.91 78.0 8.35e-01 100.0% 98.9%
4971845 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.90 73.0 8.02e-01 100.0% 98.9%
5000976 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.81 77.0 7.47e-01 100.0% 90.4%
3269477 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.80 77.0 7.12e-01 100.0% 93.4%
3974057 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.79 76.0 7.00e-01 100.0% 96.2%
5052085 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.79 75.0 7.16e-01 100.0% 99.2%
3956568 2011.1.1.13 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gamma_PGA_hydro 0.78 64.0 6.78e-01 99.5% 93.8%
10185 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.78 75.0 6.80e-01 100.0% 97.0%
5038568 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.77 74.0 6.62e-01 100.0% 88.1%
5076578 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.77 67.0 6.89e-01 100.0% 94.6%
10186 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.77 73.0 6.89e-01 100.0% 94.4%
5050400 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.76 60.0 6.31e-01 97.2% 89.2%
5054746 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.76 73.0 6.90e-01 100.0% 90.4%
2875909 2011.1.1.5 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 0.74 56.0 6.29e-01 97.7% 98.2%
1675270 2011.1.1.2 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14,Pepdidase_M14_N 0.72 69.0 5.55e-01 100.0% 61.1%
5082207 2011.4.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Peptidase_C15 0.69 58.0 6.21e-01 95.8% 98.9%
4997426 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.69 64.0 6.48e-01 99.1% 99.5%
5032749 2011.4.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Peptidase_C15 0.68 60.0 6.13e-01 97.2% 95.6%
3959498 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.66 53.0 5.47e-01 92.5% 87.5%
3592440 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.66 62.0 5.45e-01 100.0% 80.0%
5049397 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.66 62.0 5.50e-01 100.0% 70.7%
3479786 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.66 62.0 5.04e-01 100.0% 67.4%
3954830 2011.1.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M18 0.66 62.0 5.41e-01 100.0% 82.2%
3901356 2011.1.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 0.66 62.0 5.55e-01 100.0% 85.9%
4416577 2011.1.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M18 0.65 61.0 5.38e-01 100.0% 80.2%
3491242 2011.4.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Peptidase_C15 0.65 57.0 5.88e-01 96.7% 98.0%
3735007 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.65 61.0 5.16e-01 100.0% 82.1%
4012294 2011.4.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 0.65 60.0 5.79e-01 97.7% 96.2%
2439873 2011.4.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Peptidase_C15 0.65 61.0 6.12e-01 98.1% 98.6%
3690234 2012.1.1.2 a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB 0.65 49.0 4.52e-01 97.2% 60.4%
5030417 2007.1.16.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.65 29.0 3.84e-01 93.9% 74.6%
4024452 2011.1.1.21 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.64 57.0 5.23e-01 100.0% 72.1%
4932598 2011.1.1.11 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 0.64 60.0 5.49e-01 98.6% 80.0%
3507144 2011.1.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M18 0.63 55.0 5.57e-01 92.1% 96.3%
5023757 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.63 60.0 5.35e-01 100.0% 80.2%
4341414 2011.1.1.21 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.63 59.0 5.12e-01 100.0% 75.6%
3948378 2012.1.1.2 a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB 0.62 50.0 4.51e-01 96.7% 61.4%
4972555 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.62 58.0 5.07e-01 100.0% 88.7%
5041474 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.60 57.0 5.54e-01 100.0% 91.7%
4980015 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.60 53.0 5.23e-01 99.1% 87.0%
5066942 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.59 55.0 4.98e-01 100.0% 87.2%
1087598 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.59 55.0 5.35e-01 100.0% 97.9%
3271830 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.58 44.0 4.54e-01 97.2% 82.4%
4548862 2007.2.1.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.57 38.0 4.53e-01 98.1% 100.0%
4405324 2003.1.1.120 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA 0.56 38.0 4.20e-01 97.2% 84.7%
3289723 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 35.0 4.08e-01 99.5% 87.7%
3272096 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.53 34.0 3.46e-01 98.1% 62.3%
4370144 2007.1.1.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Peptidase_S66 0.52 37.0 4.20e-01 97.7% 97.4%
3517582 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.52 47.0 3.82e-01 99.1% 76.1%
4270866 2007.12.1.0 a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain 0.51 38.0 4.10e-01 97.7% 88.5%
3330378 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.51 35.0 3.60e-01 100.0% 72.2%
3897028 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 28.0 3.42e-01 99.5% 81.4%