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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00229

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00229

Identity

Kingdom:
phage

Quality

80.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-145
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00856.34 best SET 26.8 8.50e-06 86.7% 100.0%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ep0A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.87 64.0 6.97e-01 95.6% 89.4%
3kmaA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.85 61.0 6.89e-01 94.1% 95.2%
3db5A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.83 62.0 6.48e-01 96.3% 83.1%
4rz0A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.83 65.0 7.09e-01 100.0% 96.5%
3qwwA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.81 56.0 6.64e-01 94.1% 100.0%
2rfiB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.80 66.0 5.21e-01 100.0% 45.6%
4qenA03 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.80 65.0 5.07e-01 100.0% 43.8%
3dalA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.79 68.0 6.08e-01 100.0% 67.6%
5vacA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.79 70.0 5.84e-01 100.0% 58.1%
4ynmB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.78 66.0 5.73e-01 100.0% 61.2%
2qpwA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.78 61.0 6.36e-01 93.3% 87.3%
3n71A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.77 48.0 5.81e-01 97.8% 91.4%
2f69A02 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.77 66.0 6.53e-01 97.0% 84.6%
3rayA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.77 62.0 5.83e-01 99.3% 71.1%
1mvhA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.76 68.0 5.28e-01 97.0% 47.2%
3ihxC01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.75 59.0 6.26e-01 100.0% 90.9%
3ru0A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.74 58.0 5.85e-01 100.0% 80.7%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.74 66.0 6.16e-01 100.0% 78.3%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.74 66.0 5.51e-01 99.3% 58.8%
4mi0A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.73 59.0 5.06e-01 97.8% 54.8%
1ml9A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.73 68.0 5.33e-01 97.8% 51.9%
3rq4A02 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.72 60.0 5.97e-01 100.0% 83.8%
3bo5A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.72 68.0 5.27e-01 100.0% 58.0%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.71 66.0 6.31e-01 100.0% 85.2%
5lszA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.71 67.0 5.34e-01 99.3% 59.3%
2h21B01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.68 63.0 5.02e-01 100.0% 87.5%
3qxyA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.67 62.0 4.96e-01 100.0% 88.5%
6ictA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.65 61.0 4.57e-01 100.0% 71.9%
2e44A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 25.0 3.04e-01 75.6% 73.3%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2755847 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.83 67.0 7.13e-01 97.8% 94.1%
346836 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.83 66.0 6.65e-01 100.0% 82.8%
3196080 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.82 70.0 5.82e-01 100.0% 55.3%
3198522 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.82 67.0 5.63e-01 100.0% 54.3%
3750493 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.82 73.0 6.13e-01 100.0% 60.0%
4164633 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.81 64.0 4.94e-01 100.0% 40.7%
3255283 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.81 65.0 4.49e-01 100.0% 27.6%
3991623 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.80 68.0 5.82e-01 100.0% 59.6%
3715572 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.80 70.0 5.40e-01 100.0% 44.9%
3695264 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.80 70.0 5.97e-01 100.0% 61.0%
3902555 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.80 72.0 6.73e-01 100.0% 79.4%
3743917 70.3.1.8 beta barrels › beta-clip › SET domain-like › SET domain-like › SET+N-SET 0.80 68.0 5.61e-01 100.0% 54.1%
3880902 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.80 69.0 6.50e-01 100.0% 76.7%
3831282 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.80 67.0 5.50e-01 100.0% 51.7%
3360524 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.79 67.0 5.58e-01 100.0% 54.1%
3579071 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.79 69.0 5.70e-01 100.0% 55.5%
3554684 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.79 67.0 6.01e-01 100.0% 66.1%
4949565 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.79 65.0 6.78e-01 100.0% 92.8%
3467859 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.79 71.0 6.55e-01 100.0% 77.0%
3911394 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.79 69.0 6.08e-01 100.0% 66.0%
3613789 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.78 69.0 6.67e-01 100.0% 83.3%
3389039 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.78 66.0 6.16e-01 100.0% 73.6%
3516459 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.78 68.0 5.84e-01 100.0% 61.5%
3370438 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.78 55.0 5.67e-01 100.0% 75.4%
3754133 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.77 65.0 5.95e-01 100.0% 69.4%
3594127 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.77 69.0 6.03e-01 100.0% 65.6%
None 0.77 71.0 6.89e-01 100.0% 89.0%
3613661 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.77 53.0 3.91e-01 97.0% 30.3%
3710427 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.77 70.0 6.28e-01 100.0% 72.6%
3651403 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.77 70.0 5.61e-01 100.0% 53.6%
3935886 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.75 67.0 5.68e-01 100.0% 61.0%
3489471 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.75 71.0 6.18e-01 100.0% 70.3%
3253681 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.75 68.0 6.12e-01 100.0% 71.7%
166780 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.75 62.0 5.76e-01 97.8% 71.2%
3248373 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.75 67.0 5.37e-01 100.0% 52.5%
3523774 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.75 66.0 5.77e-01 100.0% 64.6%
223873 70.3.1.11 beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.73 69.0 5.28e-01 100.0% 90.8%
3514846 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.73 65.0 5.95e-01 100.0% 74.1%
3272079 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.73 68.0 5.08e-01 100.0% 88.6%
3599366 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.73 68.0 5.15e-01 100.0% 88.3%
3561499 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.72 67.0 6.08e-01 100.0% 75.4%
3899305 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.72 64.0 5.85e-01 100.0% 73.5%
3402385 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.72 68.0 5.94e-01 100.0% 71.3%
3238932 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.72 69.0 5.43e-01 100.0% 57.1%
3733126 70.3.1.11 beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.72 68.0 5.12e-01 100.0% 89.3%
3592609 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.72 67.0 5.05e-01 100.0% 92.2%
3229357 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.72 66.0 5.95e-01 100.0% 74.3%
3720868 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.72 66.0 5.33e-01 100.0% 54.6%
3641451 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.71 68.0 6.07e-01 100.0% 80.4%
3995591 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.71 52.0 5.13e-01 100.0% 72.1%
3285899 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.71 58.0 5.92e-01 100.0% 87.3%
3869968 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.71 62.0 5.60e-01 100.0% 70.9%
3601100 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.71 63.0 5.54e-01 100.0% 67.6%
3929010 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.71 67.0 5.66e-01 100.0% 70.0%
3180896 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.71 66.0 5.57e-01 100.0% 93.5%
3705509 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.71 66.0 5.55e-01 100.0% 92.1%
3651096 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.70 66.0 4.87e-01 100.0% 94.8%
3300075 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.70 67.0 5.50e-01 100.0% 61.8%
3610961 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.70 65.0 4.99e-01 100.0% 88.3%
3609569 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.70 61.0 5.94e-01 100.0% 84.8%
3395720 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.70 66.0 5.04e-01 100.0% 93.3%
3708783 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.70 65.0 4.92e-01 100.0% 91.7%
3179539 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 66.0 5.91e-01 100.0% 78.7%
None 0.69 61.0 5.78e-01 100.0% 80.0%
3206426 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 65.0 5.86e-01 100.0% 85.6%
4030173 70.3.1.11 beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.69 65.0 5.01e-01 100.0% 93.2%
3218380 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 64.0 5.82e-01 100.0% 75.4%
4011557 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 65.0 5.19e-01 100.0% 63.6%
3702641 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 63.0 4.85e-01 97.0% 91.8%
3353301 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 65.0 4.96e-01 100.0% 89.1%
3442823 70.3.1.13 beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL 0.69 64.0 5.22e-01 100.0% 73.8%
3717288 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 65.0 4.79e-01 100.0% 94.7%
1918803 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.69 59.0 6.14e-01 99.3% 99.2%
3601854 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.68 64.0 4.99e-01 100.0% 91.1%
3195285 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.68 64.0 5.13e-01 100.0% 64.4%
3596781 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.68 63.0 4.92e-01 100.0% 92.4%
3930039 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.68 58.0 5.42e-01 100.0% 75.0%
3716558 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.67 61.0 4.92e-01 98.5% 83.6%
3472625 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.66 59.0 5.10e-01 100.0% 63.9%
3741658 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.66 61.0 4.95e-01 100.0% 84.1%
3486528 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.66 59.0 5.04e-01 100.0% 61.5%
3210777 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.66 61.0 5.53e-01 100.0% 82.2%
3403295 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.65 61.0 4.80e-01 100.0% 93.2%
3205142 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.65 61.0 5.49e-01 100.0% 91.1%
4030410 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.65 60.0 4.60e-01 100.0% 92.7%
3783216 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.65 61.0 4.62e-01 100.0% 85.8%
3700717 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.64 60.0 4.95e-01 100.0% 84.4%
3862803 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.63 59.0 5.23e-01 100.0% 71.6%
3853180 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.61 50.0 4.97e-01 92.6% 82.1%
3490436 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.61 48.0 5.31e-01 88.9% 100.0%
3842083 70.3.1.5 beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.60 49.0 5.03e-01 93.3% 88.5%
D2 medium residues 146-176
PDB