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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00232
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00232
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-123
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xzpB00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.68 | 47.0 | 4.61e-01 | 78.0% | 66.4% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.64 | 40.0 | 4.76e-01 | 76.4% | 96.2% |
| 3ijtB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 48.0 | 4.59e-01 | 79.7% | 90.2% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.63 | 40.0 | 4.54e-01 | 82.9% | 87.6% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 41.0 | 3.98e-01 | 72.4% | 81.0% |
| 4gf3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 35.0 | 3.55e-01 | 79.7% | 58.5% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 36.0 | 4.23e-01 | 80.5% | 92.9% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 42.0 | 3.89e-01 | 76.4% | 88.7% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 44.0 | 4.02e-01 | 82.1% | 87.5% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 43.0 | 4.15e-01 | 79.7% | 94.4% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 46.0 | 4.18e-01 | 84.6% | 82.0% |
| 1z94B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 41.0 | 3.95e-01 | 75.6% | 91.6% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 37.0 | 4.10e-01 | 81.3% | 83.0% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 33.0 | 3.52e-01 | 82.9% | 64.5% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 48.0 | 4.27e-01 | 95.9% | 92.6% |
| 3n89A01 | 3.30.310.270 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 44.0 | 3.75e-01 | 91.1% | 53.3% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 42.0 | 3.97e-01 | 82.1% | 98.0% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 40.0 | 3.99e-01 | 79.7% | 91.7% |
| 3r4kA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 37.0 | 3.29e-01 | 70.7% | 74.3% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 37.0 | 3.45e-01 | 70.7% | 88.8% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 39.0 | 3.70e-01 | 75.6% | 90.4% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 4.05e-01 | 83.7% | 90.5% |
| 1jyaB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 34.0 | 3.52e-01 | 85.4% | 66.1% |
| 1p97A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 3.87e-01 | 74.8% | 97.4% |
| 2lioA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 38.0 | 3.73e-01 | 76.4% | 99.3% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 3.19e-01 | 77.2% | 67.9% |
| 4afkA00 | 2.40.160.100 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 36.0 | 2.51e-01 | 74.0% | 72.1% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.51 | 35.0 | 3.98e-01 | 76.4% | 97.8% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.99e-01 | 94.3% | 98.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.77 | 62.0 | 4.50e-01 | 84.6% | 38.4% | |
| 3808055 | 244.1.1.29 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc | 0.74 | 60.0 | 6.14e-01 | 86.2% | 100.0% |
| 3924642 | 3850.1.1.0 ↗ | few secondary structure elements › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain | 0.62 | 38.0 | 4.70e-01 | 71.5% | 100.0% |
| 3967686 | 331.3.1.52 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28469 | 0.62 | 45.0 | 4.22e-01 | 76.4% | 91.6% |
| 4965742 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.62 | 46.0 | 4.30e-01 | 76.4% | 88.7% |
| 5004059 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.62 | 45.0 | 4.25e-01 | 74.8% | 89.7% |
| 3956791 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.60 | 44.0 | 4.08e-01 | 76.4% | 90.8% |
| 3269530 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.59 | 48.0 | 4.22e-01 | 84.6% | 60.0% |
| 3281592 | 331.3.1.31 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1990 | 0.58 | 45.0 | 4.15e-01 | 80.5% | 90.3% |
| 3250567 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.57 | 44.0 | 3.99e-01 | 87.8% | 58.3% |
| 386453 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.57 | 40.0 | 3.68e-01 | 72.4% | 71.2% |
| 3484611 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.57 | 41.0 | 3.68e-01 | 74.8% | 89.4% |
| 3937294 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.57 | 46.0 | 4.02e-01 | 86.2% | 89.4% |
| 3962288 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 45.0 | 4.47e-01 | 85.4% | 95.4% |
| 3972673 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.56 | 46.0 | 4.28e-01 | 87.8% | 98.7% |
| 3268196 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.56 | 40.0 | 3.76e-01 | 74.0% | 89.3% |
| 3668772 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.55 | 41.0 | 3.73e-01 | 78.0% | 86.5% |
| 3608096 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.54 | 41.0 | 4.25e-01 | 82.1% | 86.4% |
| 3228722 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.54 | 40.0 | 3.97e-01 | 79.7% | 74.1% |
| 4996826 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 41.0 | 2.71e-01 | 81.3% | 38.9% |
| 3277897 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.54 | 39.0 | 3.71e-01 | 76.4% | 91.3% |
| 4025359 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.53 | 41.0 | 4.25e-01 | 84.6% | 86.4% |
| 3807906 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.52 | 41.0 | 3.44e-01 | 82.9% | 87.4% |
| 3744021 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.52 | 40.0 | 4.20e-01 | 82.1% | 90.9% |
| 4999273 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.52 | 40.0 | 2.58e-01 | 82.9% | 46.0% |
| 3462794 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.51 | 37.0 | 3.43e-01 | 76.4% | 92.1% |
| 5018491 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.51 | 37.0 | 2.81e-01 | 75.6% | 85.9% |
D2
high
residues 129-300
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 59.5 | 6.90e-16 | 73.3% | 94.7% |
D3
medium
residues 305-389
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.76 | 46.0 | 4.51e-01 | 91.8% | 56.5% |
| 4v19K02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.69 | 50.0 | 5.30e-01 | 95.3% | 86.7% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.68 | 32.0 | 4.04e-01 | 84.7% | 75.0% |
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.57 | 44.0 | 4.62e-01 | 98.8% | 88.6% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.57 | 36.0 | 3.77e-01 | 95.3% | 69.2% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 44.0 | 4.44e-01 | 100.0% | 87.1% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 42.0 | 3.46e-01 | 85.9% | 50.6% |
| 1o2dA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 43.0 | 3.49e-01 | 94.1% | 97.2% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.97e-01 | 92.9% | 81.4% |
| 3e7qA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 46.0 | 3.45e-01 | 100.0% | 42.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082325 | 3705.1.1.3 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 | 0.78 | 47.0 | 5.21e-01 | 90.6% | 74.3% |
| 3263465 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.77 | 37.0 | 3.89e-01 | 83.5% | 50.0% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.71 | 44.0 | 4.67e-01 | 91.8% | 70.7% |
| 4220501 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.67 | 41.0 | 4.01e-01 | 90.6% | 54.7% |
| 5036344 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.60 | 48.0 | 3.53e-01 | 87.1% | 60.9% |
| 4997364 | 148.1.3.25 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_8 | 0.60 | 34.0 | 3.87e-01 | 82.4% | 73.8% |
| 3979378 | 5051.1.1.12 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Trp_Tyr_perm | 0.59 | 46.0 | 2.99e-01 | 84.7% | 60.6% |
| 3190607 | 6169.1.1.59 ↗ | extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › PLAC8 | 0.55 | 42.0 | 4.28e-01 | 100.0% | 81.2% |
| 4943098 | 2004.1.1.1214 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RCF1-5-like_lid | 0.54 | 43.0 | 3.34e-01 | 89.4% | 93.2% |
| 3831795 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.53 | 48.0 | 3.61e-01 | 98.8% | 67.8% |
| 4941940 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.53 | 48.0 | 3.64e-01 | 100.0% | 92.0% |
| 3936623 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.53 | 40.0 | 3.57e-01 | 89.4% | 56.0% |
| 4646832 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 47.0 | 3.53e-01 | 100.0% | 89.0% |
| 4936471 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.52 | 42.0 | 3.36e-01 | 95.3% | 93.0% |
| 3727634 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.52 | 38.0 | 4.15e-01 | 97.6% | 94.3% |
| None | — | 0.51 | 45.0 | 3.46e-01 | 100.0% | 91.0% |