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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00240
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00240
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-113
Domain cluster:
rep: hypothetical_protein_EhV353__YP_294111__Emiliania_huxleyi_virus_86__181082__D8-106
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.79 | 52.0 | 4.86e-01 | 100.0% | 55.1% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.76 | 58.0 | 5.57e-01 | 100.0% | 70.9% |
| 1g8mA03 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.73 | 57.0 | 5.18e-01 | 100.0% | 62.6% |
| 2hvwA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.66 | 56.0 | 5.06e-01 | 100.0% | 68.0% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 50.0 | 4.83e-01 | 100.0% | 73.0% |
| 7sf2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 40.0 | 4.39e-01 | 86.7% | 75.3% |
| 5h4cB00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 38.0 | 3.58e-01 | 86.7% | 48.9% |
| 3skvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 36.0 | 3.32e-01 | 91.2% | 43.5% |
| 5f7uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 37.0 | 3.76e-01 | 88.5% | 62.2% |
| 1vq2A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 57.0 | 4.82e-01 | 100.0% | 68.2% |
| 6se8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.26e-01 | 87.6% | 75.0% |
| 2q1fA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.59 | 38.0 | 3.32e-01 | 85.8% | 43.1% |
| 2wq4A01 | 2.60.120.760 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 38.0 | 3.68e-01 | 86.7% | 57.4% |
| 2wngA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 32.0 | 3.61e-01 | 88.5% | 67.8% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.58 | 37.0 | 3.85e-01 | 87.6% | 68.6% |
| 2vsdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 33.0 | 3.61e-01 | 86.7% | 68.8% |
| 1zq7A01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.56 | 39.0 | 3.73e-01 | 90.3% | 63.0% |
| 2q3xA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 40.0 | 3.73e-01 | 91.2% | 60.6% |
| 5tgfD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 37.0 | 2.71e-01 | 73.5% | 88.9% |
| 1g8mA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.51 | 40.0 | 3.45e-01 | 100.0% | 52.8% |
| 2q18X02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.51 | 37.0 | 3.01e-01 | 90.3% | 40.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3393247 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.71 | 57.0 | 5.02e-01 | 100.0% | 61.0% |
| 3917355 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.65 | 37.0 | 3.96e-01 | 87.6% | 63.0% |
| 4946493 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 37.0 | 4.14e-01 | 91.2% | 72.2% |
| 4269845 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.61 | 42.0 | 4.28e-01 | 90.3% | 71.8% |
| 2141858 | 11.1.1.203 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 | 0.59 | 42.0 | 4.32e-01 | 89.4% | 76.4% |
| 5034925 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 40.0 | 4.27e-01 | 97.3% | 79.0% |
| 3517819 | 11.1.1.203 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 | 0.59 | 40.0 | 4.20e-01 | 88.5% | 78.0% |
| 4991801 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.58 | 42.0 | 4.15e-01 | 100.0% | 69.6% |
| 5001609 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 37.0 | 3.83e-01 | 87.6% | 68.2% |
| 3506720 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 42.0 | 4.11e-01 | 91.2% | 70.4% |
| 3503375 | 11.1.4.72 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_2nd | 0.56 | 35.0 | 3.94e-01 | 91.2% | 82.4% |
| 3266467 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 34.0 | 3.47e-01 | 85.8% | 59.1% |
| 3647964 | 11.1.1.203 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 | 0.55 | 40.0 | 4.15e-01 | 87.6% | 81.0% |
| 5014883 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 35.0 | 3.45e-01 | 87.6% | 59.2% |
| 3323944 | 11.1.1.203 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 | 0.55 | 39.0 | 4.01e-01 | 87.6% | 77.3% |
| 3704033 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 43.0 | 3.64e-01 | 85.0% | 72.8% |
| 5064714 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.46e-01 | 86.7% | 58.5% |
| 3492374 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.52 | 41.0 | 4.03e-01 | 85.0% | 84.8% |
| 3998159 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 42.0 | 3.95e-01 | 91.2% | 72.4% |
| 3995556 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 42.0 | 3.59e-01 | 91.2% | 53.8% |
| 5033997 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 40.0 | 3.56e-01 | 90.3% | 58.1% |
| 4030677 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.51 | 38.0 | 3.45e-01 | 91.2% | 58.0% |
| 3614538 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 42.0 | 3.77e-01 | 90.3% | 78.1% |
| 3514675 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 37.0 | 3.69e-01 | 92.0% | 74.8% |
| 3236478 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 42.0 | 3.87e-01 | 91.2% | 69.8% |
| 3507358 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 42.0 | 3.81e-01 | 92.9% | 68.0% |