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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00269

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00269

Identity

Kingdom:
phage

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-64
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.72 60.0 3.92e-01 96.2% 37.1%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.72 60.0 3.81e-01 96.2% 39.9%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 57.0 3.57e-01 96.2% 32.4%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 46.0 4.64e-01 98.1% 68.5%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 55.0 3.50e-01 90.4% 33.6%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 56.0 3.67e-01 96.2% 40.9%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 58.0 3.73e-01 100.0% 39.2%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 55.0 3.36e-01 96.2% 29.5%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 54.0 3.36e-01 100.0% 28.8%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.64 55.0 4.04e-01 100.0% 63.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.63 55.0 3.68e-01 100.0% 26.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.63 42.0 3.15e-01 71.2% 73.9%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.62 51.0 4.22e-01 96.2% 75.8%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.61 48.0 3.77e-01 90.4% 50.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.61 40.0 2.83e-01 71.2% 19.3%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 49.0 3.16e-01 96.2% 32.6%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.76e-01 100.0% 91.2%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 41.0 4.02e-01 71.2% 63.2%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.60 49.0 3.25e-01 96.2% 45.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 50.0 3.79e-01 100.0% 37.9%
6s6yD02 3.30.70.520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 40.0 3.00e-01 71.2% 25.2%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 51.0 4.05e-01 98.1% 56.6%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 50.0 3.85e-01 100.0% 70.3%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.66e-01 100.0% 65.2%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.58 48.0 3.93e-01 100.0% 71.8%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 46.0 3.54e-01 94.2% 89.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 48.0 3.63e-01 98.1% 95.7%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.76e-01 100.0% 76.6%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.58 49.0 3.67e-01 100.0% 38.4%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 47.0 4.14e-01 100.0% 60.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.69e-01 100.0% 71.0%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.57 49.0 3.83e-01 100.0% 56.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.42e-01 100.0% 77.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.65e-01 100.0% 76.6%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.65e-01 100.0% 84.0%
4ekfA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.55 45.0 3.20e-01 100.0% 28.6%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.55 44.0 3.43e-01 100.0% 73.8%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.55 45.0 3.93e-01 98.1% 77.3%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.76e-01 98.1% 90.0%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.78e-01 94.2% 59.5%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 43.0 3.66e-01 100.0% 86.0%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 2.85e-01 88.5% 79.5%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 44.0 2.78e-01 100.0% 89.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.48e-01 98.1% 16.8%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.14e-01 98.1% 49.7%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 40.0 2.83e-01 94.2% 43.9%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 2.87e-01 82.7% 96.3%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.71e-01 100.0% 85.3%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 40.0 3.57e-01 98.1% 75.6%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.69e-01 100.0% 68.5%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 44.0 3.09e-01 98.1% 55.8%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.35e-01 96.2% 68.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592358 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.21e-01 100.0% 91.3%
3996165 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.62 49.0 3.17e-01 94.2% 34.1%
3957192 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 52.0 4.05e-01 100.0% 74.4%
3911919 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.60 51.0 3.11e-01 100.0% 24.3%
3226303 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.60 43.0 3.13e-01 80.8% 27.1%
3962011 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 49.0 3.70e-01 96.2% 99.3%
3509038 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 51.0 4.09e-01 94.2% 76.0%
3673333 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.59 51.0 3.88e-01 98.1% 48.0%
3972580 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.59 48.0 4.34e-01 100.0% 88.7%
3598462 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 3.85e-01 100.0% 79.2%
3531090 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.58 42.0 3.02e-01 80.8% 25.7%
3652106 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 49.0 3.97e-01 98.1% 53.8%
3548074 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 48.0 3.81e-01 100.0% 82.5%
4646733 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 48.0 4.02e-01 100.0% 61.0%
5072644 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.57 41.0 3.14e-01 78.8% 80.0%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.57 47.0 3.69e-01 100.0% 71.0%
3490216 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 47.0 3.68e-01 100.0% 80.0%
3832176 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 46.0 4.25e-01 96.2% 77.1%
4023915 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.56 47.0 3.75e-01 100.0% 85.2%
3911275 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 46.0 2.78e-01 100.0% 18.8%
3514888 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.56 45.0 3.09e-01 96.2% 26.7%
3826752 1.1.7.119 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › B3 0.56 46.0 4.03e-01 98.1% 65.9%
3546981 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 46.0 3.53e-01 100.0% 70.0%
3994778 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.51e-01 100.0% 70.5%
3932304 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 2.90e-01 78.8% 30.0%
5015118 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.55 44.0 3.62e-01 100.0% 91.3%
3284156 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 37.0 3.23e-01 71.2% 52.9%
3739339 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.55 45.0 3.91e-01 100.0% 66.7%
4265952 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.54 45.0 3.14e-01 100.0% 30.8%
3287567 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.54 44.0 3.85e-01 100.0% 61.1%
3601930 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.54 44.0 3.11e-01 96.2% 53.0%
3707219 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.54 38.0 2.99e-01 76.9% 36.7%
3649062 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.54 42.0 3.23e-01 100.0% 85.8%
3593291 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 2.94e-01 80.8% 73.8%
3593636 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.58e-01 100.0% 89.1%
4927783 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 41.0 3.21e-01 86.5% 89.2%
3241597 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 46.0 2.88e-01 100.0% 86.8%
3551723 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.53 37.0 2.82e-01 80.8% 29.4%
5067503 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 40.0 3.30e-01 96.2% 86.4%
3472961 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 2.84e-01 78.8% 29.3%
3624184 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 38.0 3.06e-01 80.8% 40.9%
4478350 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 41.0 3.19e-01 86.5% 89.2%
3964724 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.53 35.0 2.61e-01 71.2% 23.2%
3629315 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.07e-01 100.0% 63.2%
5080919 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.52e-01 100.0% 78.1%
5054090 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.51 40.0 3.31e-01 100.0% 89.2%
3268410 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.51 44.0 2.67e-01 100.0% 89.7%
3928361 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.51 41.0 3.20e-01 100.0% 85.0%
3500942 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.51 35.0 2.94e-01 76.9% 44.5%
3668817 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.51 40.0 2.92e-01 100.0% 30.8%
3615163 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.43e-01 100.0% 77.6%
4399358 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.50 39.0 3.17e-01 100.0% 85.9%
3328167 11.1.1.635 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.50 41.0 3.28e-01 100.0% 100.0%