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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00290
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00290
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-49
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ou5A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 54.0 | 3.93e-01 | 93.8% | 59.3% |
| 1nkiA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.62 | 49.0 | 3.68e-01 | 93.8% | 76.9% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 41.0 | 3.99e-01 | 100.0% | 62.5% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 4.02e-01 | 100.0% | 66.7% |
| 2vnuD04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 41.0 | 3.64e-01 | 79.2% | 74.7% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 3.99e-01 | 100.0% | 72.5% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 36.0 | 3.36e-01 | 83.3% | 45.3% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 40.0 | 4.03e-01 | 100.0% | 83.0% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 37.0 | 3.49e-01 | 95.8% | 56.5% |
| 1tv8B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 44.0 | 2.78e-01 | 100.0% | 23.3% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.53 | 38.0 | 3.80e-01 | 100.0% | 74.5% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 35.0 | 3.50e-01 | 83.3% | 65.4% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 43.0 | 3.99e-01 | 100.0% | 71.6% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 35.0 | 2.99e-01 | 72.9% | 38.5% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.51 | 34.0 | 2.55e-01 | 70.8% | 49.0% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 39.0 | 3.84e-01 | 100.0% | 77.8% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 32.0 | 2.95e-01 | 72.9% | 40.6% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 36.0 | 3.28e-01 | 97.9% | 55.2% |
| 2ckkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 3.82e-01 | 100.0% | 83.0% |
| 3caiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 41.0 | 3.07e-01 | 100.0% | 70.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3213181 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 54.0 | 5.43e-01 | 95.8% | 92.0% |
| 3919221 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.64 | 45.0 | 3.98e-01 | 100.0% | 48.0% |
| None | — | 0.63 | 45.0 | 2.72e-01 | 79.2% | 41.9% | |
| 5031305 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 52.0 | 4.79e-01 | 100.0% | 73.8% |
| 3645101 | 375.1.1.80 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof | 0.62 | 43.0 | 4.35e-01 | 100.0% | 74.0% |
| 4398001 | 375.1.1.189 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EcdD_BsdD_detox | 0.60 | 43.0 | 3.79e-01 | 100.0% | 49.3% |
| 4962338 | 375.1.1.234 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD | 0.60 | 44.0 | 4.72e-01 | 100.0% | 97.5% |
| 3664655 | 601.28.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon | 0.60 | 51.0 | 3.67e-01 | 100.0% | 32.7% |
| 3175902 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 40.0 | 3.81e-01 | 70.8% | 70.0% |
| 3648747 | 376.1.3.62 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_Oberon | 0.59 | 51.0 | 4.37e-01 | 100.0% | 61.3% |
| 3707098 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 45.0 | 4.05e-01 | 100.0% | 57.3% |
| 3679724 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 40.0 | 2.41e-01 | 72.9% | 10.2% |
| 3929033 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.58 | 41.0 | 3.59e-01 | 77.1% | 48.8% |
| 3356481 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.58 | 42.0 | 3.63e-01 | 81.2% | 80.7% |
| 3305600 | 375.1.1.80 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof | 0.57 | 37.0 | 3.95e-01 | 89.6% | 80.0% |
| 3586614 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 38.0 | 3.80e-01 | 75.0% | 68.0% |
| 3475813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 38.0 | 3.95e-01 | 95.8% | 80.0% |
| 5068435 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.55 | 37.0 | 3.64e-01 | 72.9% | 87.3% |
| 3580045 | 375.1.1.217 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26040 | 0.55 | 37.0 | 4.14e-01 | 77.1% | 100.0% |
| 5030227 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.54 | 37.0 | 3.60e-01 | 72.9% | 94.5% |
| 3642424 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.53 | 38.0 | 2.44e-01 | 85.4% | 35.4% |
| 3553625 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.53 | 43.0 | 4.21e-01 | 100.0% | 90.9% |
| 3178450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 36.0 | 3.98e-01 | 95.8% | 92.1% |
| 3797970 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 41.0 | 3.41e-01 | 100.0% | 46.7% |
| 3828625 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 2.82e-01 | 100.0% | 28.5% |
| 4947278 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 39.0 | 3.97e-01 | 100.0% | 81.6% |
| 3184613 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 38.0 | 2.76e-01 | 83.3% | 31.1% |
| 4552741 | 3223.1.1.1 ↗ | beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC | 0.52 | 35.0 | 2.03e-01 | 72.9% | 73.9% |
| 2775992 | 375.1.1.189 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EcdD_BsdD_detox | 0.51 | 35.0 | 3.71e-01 | 95.8% | 94.6% |
| 5049449 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 40.0 | 4.05e-01 | 100.0% | 92.0% |
| 4931741 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.50 | 40.0 | 3.03e-01 | 100.0% | 89.3% |