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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00309
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00309
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-130_189-214
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 52.0 | 5.85e-01 | 93.3% | 98.3% |
| 4qboA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 40.0 | 5.08e-01 | 88.0% | 95.7% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 51.0 | 5.68e-01 | 89.3% | 98.3% |
| 2oaaB01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.64 | 36.0 | 4.11e-01 | 80.0% | 75.0% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.63 | 50.0 | 4.34e-01 | 82.7% | 67.1% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.63 | 51.0 | 3.98e-01 | 85.3% | 78.6% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 47.0 | 5.11e-01 | 86.0% | 93.5% |
| 2gu1A02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 33.0 | 3.88e-01 | 86.0% | 75.0% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 31.0 | 3.87e-01 | 86.7% | 81.8% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 49.0 | 4.89e-01 | 86.0% | 99.3% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 49.0 | 4.95e-01 | 88.0% | 100.0% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.59 | 49.0 | 4.19e-01 | 90.0% | 77.5% |
| 4rnyA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 33.0 | 3.42e-01 | 92.0% | 58.5% |
| 3lv0A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 37.0 | 3.83e-01 | 92.0% | 72.7% |
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 44.0 | 4.02e-01 | 84.0% | 65.6% |
| 5ha4A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 40.0 | 4.19e-01 | 75.3% | 88.2% |
| 2ezvA01 | 3.40.600.40 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain | 0.54 | 47.0 | 4.27e-01 | 92.0% | 71.1% |
| 2ewfA03 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.54 | 47.0 | 4.06e-01 | 91.3% | 82.7% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.54 | 44.0 | 4.11e-01 | 85.3% | 72.8% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 29.0 | 3.57e-01 | 87.3% | 84.0% |
| 2p14A00 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.53 | 44.0 | 4.15e-01 | 90.7% | 83.9% |
| 1ekzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 28.0 | 3.72e-01 | 90.0% | 100.0% |
| 6p4wB01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.52 | 37.0 | 4.20e-01 | 85.3% | 100.0% |
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.52 | 31.0 | 3.71e-01 | 84.0% | 92.6% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 28.0 | 3.56e-01 | 89.3% | 92.9% |
| 5n6lA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 40.0 | 3.32e-01 | 84.0% | 79.2% |
| 2vhhA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.50 | 38.0 | 2.96e-01 | 78.7% | 65.8% |
| 3hn2B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 41.0 | 3.90e-01 | 86.0% | 96.6% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.50 | 27.0 | 3.41e-01 | 83.3% | 92.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5011096 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 45.0 | 4.76e-01 | 75.3% | 65.9% |
| 4208554 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.69 | 49.0 | 5.57e-01 | 73.3% | 100.0% |
| 5010105 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.67 | 53.0 | 5.78e-01 | 90.0% | 98.4% |
| 4933590 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.67 | 50.0 | 5.38e-01 | 77.3% | 89.2% |
| 4397425 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.67 | 46.0 | 5.35e-01 | 70.7% | 100.0% |
| 4053910 | 3953.1.1.2 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 | 0.65 | 33.0 | 3.99e-01 | 86.0% | 73.0% |
| 4991180 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.64 | 52.0 | 5.52e-01 | 90.7% | 96.9% |
| 4149106 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.64 | 53.0 | 5.60e-01 | 92.7% | 96.3% |
| 4977491 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.64 | 49.0 | 5.38e-01 | 81.3% | 96.0% |
| 4942264 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.64 | 51.0 | 5.56e-01 | 90.0% | 100.0% |
| 4956648 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.63 | 53.0 | 5.63e-01 | 90.7% | 98.5% |
| 4284406 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.63 | 51.0 | 5.02e-01 | 85.3% | 98.1% |
| 5028193 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.62 | 50.0 | 5.46e-01 | 90.0% | 100.0% |
| 4973214 | 2008.1.1.210 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 | 0.62 | 49.0 | 4.66e-01 | 84.0% | 93.3% |
| 4384457 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.62 | 50.0 | 5.42e-01 | 88.7% | 98.5% |
| 5026362 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 52.0 | 5.04e-01 | 88.0% | 99.4% |
| 4935732 | 2008.1.1.165 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MjaI | 0.61 | 43.0 | 4.92e-01 | 88.0% | 97.3% |
| 4989011 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.61 | 50.0 | 5.02e-01 | 85.3% | 96.0% |
| 4948823 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.61 | 48.0 | 5.28e-01 | 86.7% | 100.0% |
| 159540 | 2008.1.1.55 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RestrictionSfiI | 0.60 | 52.0 | 4.28e-01 | 92.0% | 78.7% |
| 4660505 | 2008.1.1.186 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_9 | 0.60 | 41.0 | 4.17e-01 | 76.0% | 70.3% |
| 4489860 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.60 | 51.0 | 4.93e-01 | 90.0% | 97.0% |
| 4951715 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.60 | 44.0 | 4.94e-01 | 81.3% | 99.1% |
| 5035436 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.59 | 47.0 | 4.95e-01 | 82.7% | 95.6% |
| 5031791 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.59 | 40.0 | 4.74e-01 | 78.7% | 100.0% |
| 3604467 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 52.0 | 4.61e-01 | 94.7% | 79.0% |
| 5032419 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 51.0 | 4.62e-01 | 94.7% | 86.3% |
| 4627429 | 2008.1.1.180 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27366, PF30697 | 0.58 | 48.0 | 4.00e-01 | 89.3% | 79.2% |
| 5072639 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 50.0 | 4.93e-01 | 93.3% | 97.5% |
| 3928802 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 46.0 | 4.25e-01 | 87.3% | 83.2% |
| 4035993 | 2008.1.1.172 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26318 | 0.56 | 44.0 | 3.93e-01 | 83.3% | 85.1% |
| 3932149 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 45.0 | 4.04e-01 | 86.7% | 82.4% |
| 4032115 | 2008.1.1.102 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 | 0.55 | 42.0 | 4.66e-01 | 86.0% | 100.0% |
| 3453094 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.53 | 41.0 | 3.74e-01 | 81.3% | 91.0% |
| 5073133 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.53 | 45.0 | 4.55e-01 | 92.0% | 93.3% |
| 4929290 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 40.0 | 4.37e-01 | 88.7% | 99.2% |
| 3688445 | 10.1.1.26 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C | 0.52 | 30.0 | 2.88e-01 | 91.3% | 45.4% |
| 4998336 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.52 | 43.0 | 4.45e-01 | 90.0% | 93.8% |
| 3727039 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 44.0 | 3.66e-01 | 92.7% | 63.0% |
| 4955318 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.51 | 40.0 | 4.32e-01 | 88.0% | 96.9% |
| 4403908 | 4.1.1.291 ↗ | beta barrels › SH3 › SH3 › SH3 › YNQ4_N | 0.51 | 18.0 | 3.00e-01 | 75.3% | 97.8% |
| 5010218 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.51 | 37.0 | 4.04e-01 | 87.3% | 94.2% |
| 4946707 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 37.0 | 4.14e-01 | 86.0% | 99.1% |
D2
medium
residues 131-188
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a49A01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.58 | 46.0 | 3.34e-01 | 91.4% | 63.6% |
| 3x0xA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.57 | 44.0 | 3.68e-01 | 87.9% | 65.7% |
| 1hkvA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.50 | 41.0 | 3.04e-01 | 100.0% | 71.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3402907 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.53 | 43.0 | 3.45e-01 | 98.3% | 87.3% |
| 3740135 | 4143.1.1.7 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › PF25904 | 0.52 | 42.0 | 3.71e-01 | 96.6% | 77.9% |
| 4024822 | 4143.1.1.7 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › PF25904 | 0.51 | 38.0 | 3.12e-01 | 84.5% | 65.6% |