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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00318
Bact-VirLacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00318
Identity
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-135
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5x56B00 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.63 | 31.0 | 3.33e-01 | 100.0% | 52.4% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 44.0 | 4.56e-01 | 94.1% | 76.8% |
| 4wk5A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 47.0 | 3.66e-01 | 79.8% | 66.0% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 41.0 | 4.37e-01 | 97.5% | 76.4% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 41.0 | 3.99e-01 | 83.2% | 63.2% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.59 | 43.0 | 4.13e-01 | 98.3% | 65.5% |
| 1l7vA00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.58 | 49.0 | 3.57e-01 | 90.8% | 74.0% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 43.0 | 3.55e-01 | 77.3% | 63.7% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 37.0 | 4.28e-01 | 82.4% | 95.1% |
| 2gnoA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.56 | 39.0 | 4.17e-01 | 89.1% | 84.0% |
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.56 | 47.0 | 4.15e-01 | 95.8% | 91.5% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 44.0 | 4.17e-01 | 100.0% | 71.5% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.54 | 35.0 | 3.99e-01 | 80.7% | 88.5% |
| 1a7eA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.54 | 41.0 | 4.19e-01 | 81.5% | 82.2% |
| 3c02A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.54 | 40.0 | 3.25e-01 | 79.0% | 80.2% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.54 | 40.0 | 4.07e-01 | 90.8% | 80.5% |
| 3n98A02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.52 | 38.0 | 3.70e-01 | 77.3% | 84.3% |
| 1px5A02 | 1.10.1410.20 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 2'-5'-oligoadenylate synthetase 1, domain 2 | 0.51 | 40.0 | 3.54e-01 | 85.7% | 76.3% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.51 | 36.0 | 3.76e-01 | 87.4% | 78.8% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 43.0 | 4.06e-01 | 100.0% | 78.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978753 | 3759.1.1.1 ↗ | alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm | 0.73 | 52.0 | 5.03e-01 | 100.0% | 66.9% |
| 3959087 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.63 | 48.0 | 4.50e-01 | 100.0% | 64.7% |
| 3166681 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.61 | 42.0 | 4.46e-01 | 86.6% | 81.0% |
| 3233997 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 40.0 | 4.22e-01 | 79.8% | 79.0% |
| 3931221 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 42.0 | 3.83e-01 | 100.0% | 55.2% |
| 3601682 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.58 | 50.0 | 3.77e-01 | 100.0% | 97.0% |
| 4023679 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 49.0 | 4.84e-01 | 95.8% | 89.2% |
| 3388455 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 48.0 | 4.89e-01 | 89.9% | 96.5% |
| 3220045 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 49.0 | 4.82e-01 | 95.0% | 90.0% |
| 3870506 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 43.0 | 4.51e-01 | 95.0% | 89.1% |
| 3740538 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.55 | 39.0 | 3.19e-01 | 100.0% | 36.3% |
| 3477079 | 3832.1.1.1 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 | 0.55 | 47.0 | 4.24e-01 | 96.6% | 98.8% |
| 3924719 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.55 | 41.0 | 4.47e-01 | 94.1% | 100.0% |
| 3335074 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 38.0 | 3.74e-01 | 72.3% | 89.2% |
| 5049715 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.54 | 49.0 | 4.87e-01 | 99.2% | 100.0% |
| 4983374 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.54 | 49.0 | 4.74e-01 | 97.5% | 97.7% |
| 3488467 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 36.0 | 3.68e-01 | 80.7% | 69.6% |
| 3500625 | 604.39.1.17 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › DUF2238 | 0.54 | 45.0 | 4.14e-01 | 90.8% | 92.3% |
| 5042166 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.53 | 44.0 | 3.95e-01 | 93.3% | 93.9% |
| 3713124 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 47.0 | 4.13e-01 | 100.0% | 67.2% |
| 3671657 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 41.0 | 3.40e-01 | 84.0% | 64.1% |
| 3615679 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.52 | 43.0 | 3.66e-01 | 88.2% | 74.9% |
| 3960650 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.52 | 46.0 | 3.90e-01 | 100.0% | 90.7% |
| 3290187 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.51 | 40.0 | 3.35e-01 | 85.7% | 61.9% |
| 3703396 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 41.0 | 3.35e-01 | 88.2% | 65.3% |