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LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00390

Bact-Vir

LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00390

Identity

Kingdom:
phage

Quality

54.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 595-700
PDB
D2 high residues 713-841
PDB
Domain cluster: rep: KJ803031.1__AID16847.1__vBDshPR2C_32__00032__D58-159
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.71 50.0 5.91e-01 87.6% 100.0%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.70 46.0 5.29e-01 96.9% 90.5%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.61 55.0 5.63e-01 93.8% 99.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.86 40.0 6.06e-01 71.3% 100.0%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 36.0 5.36e-01 95.3% 100.0%
4930420 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 36.0 4.93e-01 96.9% 84.3%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.77 36.0 5.26e-01 93.0% 98.3%
2526359 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.76 36.0 5.08e-01 93.8% 96.7%
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.74 36.0 5.10e-01 89.9% 100.0%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.73 38.0 5.29e-01 93.8% 97.1%
3945288 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.72 64.0 6.19e-01 94.6% 97.9%
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.70 51.0 5.75e-01 89.9% 96.0%
4937267 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.66 58.0 6.01e-01 92.2% 99.2%
364260 70.4.1.3 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.61 55.0 5.01e-01 93.8% 99.4%
3970970 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 34.0 4.36e-01 95.3% 96.0%
3283905 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.57 31.0 4.04e-01 97.7% 100.0%
D3 medium residues 192-317
PDB
D4 medium residues 318-450
PDB
D5 medium residues 451-571
PDB