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LacPavin_0818_WC45_scaffold_125832_prodigal-single.1__X__X__00003
Bact-VirLacPavin_0818_WC45_scaffold_125832_prodigal-single.1__X__X__00003
Identity
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-110
Domain cluster:
rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00139__D5-107
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.58 | 41.0 | 3.74e-01 | 73.6% | 73.5% |
| 3g7pA00 | 1.10.3100.20 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 | 0.57 | 42.0 | 3.81e-01 | 78.3% | 92.4% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 44.0 | 3.78e-01 | 84.0% | 66.9% |
| 1n4kA02 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.55 | 42.0 | 3.75e-01 | 79.2% | 73.6% |
| 3a6pA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.55 | 39.0 | 2.26e-01 | 73.6% | 16.5% |
| 2idgA00 | 1.10.3480.10 | Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like | 0.52 | 37.0 | 3.28e-01 | 73.6% | 100.0% |
| 2e6mA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 46.0 | 3.81e-01 | 98.1% | 92.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4254111 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.60 | 43.0 | 3.94e-01 | 75.5% | 90.3% |
| 3818772 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.58 | 42.0 | 3.59e-01 | 74.5% | 78.2% |
| 3728368 | 633.26.1.0 ↗ | alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain | 0.58 | 41.0 | 3.48e-01 | 73.6% | 80.6% |
| 3610443 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 40.0 | 2.93e-01 | 71.7% | 51.6% |
| 4996991 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.56 | 50.0 | 4.01e-01 | 100.0% | 83.3% |
| 3413715 | 109.4.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB | 0.55 | 42.0 | 2.76e-01 | 80.2% | 26.5% |
| 3735364 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 39.0 | 2.82e-01 | 73.6% | 74.3% |
| 4955340 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 37.0 | 3.66e-01 | 70.8% | 100.0% |
| 3924495 | 109.4.1.587 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C | 0.52 | 37.0 | 2.64e-01 | 72.6% | 35.1% |
| 138767 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.50 | 39.0 | 2.91e-01 | 83.0% | 80.1% |
| 4585469 | 109.4.1.470 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 | 0.50 | 35.0 | 2.36e-01 | 72.6% | 21.0% |
D2
medium
residues 117-170
Domain cluster:
representative
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.52 | 39.0 | 2.50e-01 | 85.2% | 73.3% |