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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00065

Bact-Vir

LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00065

Identity

Kingdom:
phage

Quality

78.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-94
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14090.13 best HTH_39 32.7 7.60e-08 75.3% 77.1%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 5.22e-01 76.4% 65.3%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 4.86e-01 76.4% 57.1%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 56.0 5.08e-01 77.5% 64.3%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.75e-01 78.7% 84.1%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.48e-01 80.9% 83.5%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.48e-01 80.9% 81.8%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 4.54e-01 76.4% 48.5%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 4.71e-01 77.5% 52.8%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.41e-01 76.4% 47.1%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.70e-01 76.4% 60.5%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.87e-01 76.4% 62.7%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.09e-01 77.5% 69.5%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.39e-01 76.4% 48.5%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.90e-01 76.4% 63.8%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.97e-01 76.4% 68.0%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 5.11e-01 76.4% 74.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 4.34e-01 77.5% 48.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.10e-01 88.8% 64.2%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 5.14e-01 76.4% 83.1%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.86e-01 77.5% 70.8%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.88e-01 77.5% 72.8%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.75e-01 76.4% 72.8%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.84e-01 77.5% 70.8%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.17e-01 91.0% 74.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.33e-01 78.7% 68.3%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 48.0 4.84e-01 95.5% 87.4%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 47.0 4.31e-01 82.0% 89.5%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.86e-01 75.3% 81.1%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.56 42.0 3.92e-01 80.9% 63.1%
7x4lC02 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 38.0 3.44e-01 70.8% 59.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.76e-01 77.5% 67.0%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 41.0 3.67e-01 79.8% 60.2%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 40.0 3.24e-01 78.7% 62.0%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 42.0 4.06e-01 88.8% 82.0%
2b3tA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.88e-01 77.5% 34.4%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 3.06e-01 77.5% 59.5%
6bx7A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 36.0 3.38e-01 75.3% 60.0%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 38.0 3.35e-01 80.9% 77.2%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965117 101.1.2.369 alpha arrays › HTH › HTH › winged helix domain › HTH_39 0.89 63.0 7.36e-01 76.4% 100.0%
4957195 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.80 56.0 5.26e-01 77.5% 61.0%
4971744 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 58.0 5.91e-01 77.5% 78.8%
5047446 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 55.0 4.96e-01 76.4% 54.2%
5051882 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.78 56.0 5.19e-01 77.5% 60.0%
3609469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 56.0 5.47e-01 76.4% 69.5%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.78 56.0 5.64e-01 77.5% 74.4%
5072200 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 56.0 5.29e-01 76.4% 66.7%
5011620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 5.44e-01 76.4% 73.3%
5075830 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 55.0 5.17e-01 77.5% 61.8%
4983914 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.76 56.0 5.84e-01 77.5% 85.0%
5008022 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.75 54.0 5.17e-01 78.7% 66.0%
5031063 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 54.0 5.45e-01 75.3% 75.6%
4959927 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 54.0 4.28e-01 76.4% 43.5%
5065027 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 54.0 4.56e-01 77.5% 51.0%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 53.0 4.19e-01 76.4% 41.1%
4945186 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 5.25e-01 91.0% 60.8%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 53.0 4.15e-01 76.4% 40.0%
5000349 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 53.0 4.80e-01 76.4% 66.7%
5062639 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.73 54.0 5.30e-01 77.5% 72.6%
4964147 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.72 55.0 5.45e-01 80.9% 88.4%
3802667 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.72 53.0 5.07e-01 77.5% 72.4%
3601862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 3.54e-01 83.1% 16.5%
5011183 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 52.0 4.88e-01 76.4% 74.5%
5058454 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 5.42e-01 77.5% 84.7%
5082386 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 52.0 4.67e-01 76.4% 59.7%
3285382 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 52.0 4.91e-01 77.5% 70.9%
4926994 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.71 52.0 4.98e-01 77.5% 66.3%
4999532 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 52.0 3.78e-01 76.4% 31.5%
3360854 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.71 52.0 4.68e-01 76.4% 64.2%
3206556 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.71 53.0 3.83e-01 79.8% 38.0%
3228509 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.71 52.0 4.51e-01 77.5% 59.3%
5068497 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.70 56.0 5.11e-01 88.8% 64.4%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 52.0 4.09e-01 77.5% 50.6%
5048181 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.70 51.0 4.16e-01 77.5% 61.8%
5044892 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 52.0 4.74e-01 77.5% 66.1%
415845 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.70 56.0 5.04e-01 88.8% 62.6%
5064968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 4.52e-01 77.5% 70.0%
5050259 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 51.0 4.04e-01 77.5% 41.6%
5079724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 4.80e-01 77.5% 64.8%
4961794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 4.44e-01 75.3% 67.2%
4948149 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 4.91e-01 84.3% 65.5%
5067344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.47e-01 91.0% 79.0%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 4.30e-01 77.5% 50.8%
5005164 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 50.0 4.73e-01 77.5% 74.1%
5065252 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.09e-01 89.9% 74.0%
3969012 101.1.2.485 alpha arrays › HTH › HTH › winged helix domain › DUF2513 0.67 47.0 4.77e-01 77.5% 73.3%
3524337 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.67 48.0 5.05e-01 75.3% 92.5%
3168705 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.67 49.0 4.06e-01 78.7% 51.5%
4957685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.07e-01 84.3% 77.9%
3842720 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 5.02e-01 75.3% 92.5%
3688689 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.67 49.0 4.36e-01 78.7% 60.8%
4669204 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 59.0 3.78e-01 100.0% 35.5%
3622588 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.65 48.0 3.55e-01 78.7% 60.4%
2609 101.1.2.38 alpha arrays › HTH › HTH › winged helix domain › RTP 0.64 47.0 4.33e-01 78.7% 68.3%
3990873 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.64 47.0 3.60e-01 78.7% 44.2%
3501318 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.64 54.0 3.57e-01 94.4% 57.2%
3370279 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.62 46.0 4.72e-01 77.5% 90.4%
5029087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 5.00e-01 84.3% 92.5%
5016171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.18e-01 89.9% 62.5%
3601608 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 3.69e-01 84.3% 50.7%
3192077 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.61 52.0 4.50e-01 95.5% 84.3%
3332006 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.61 54.0 4.89e-01 97.8% 91.7%
3739985 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.60 53.0 4.47e-01 100.0% 78.1%
3701433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.26e-01 84.3% 85.0%
3569598 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.59 43.0 3.79e-01 77.5% 72.1%
4033792 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.59 46.0 4.05e-01 84.3% 57.0%
4017553 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 43.0 4.29e-01 88.8% 81.1%
3743748 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.30e-01 88.8% 84.4%
3677432 2003.1.5.70 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_15 0.53 40.0 2.86e-01 82.0% 25.7%
3345924 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.51 44.0 3.48e-01 97.8% 92.8%
4982133 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.51 35.0 3.72e-01 71.9% 97.5%