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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00072
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00072
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-105
Domain cluster:
rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.94 | 71.0 | 8.08e-01 | 88.7% | 100.0% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.91 | 44.0 | 5.67e-01 | 77.3% | 78.3% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.87 | 51.0 | 6.24e-01 | 78.4% | 89.2% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 41.0 | 5.79e-01 | 76.3% | 93.9% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 43.0 | 5.23e-01 | 81.4% | 74.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 44.0 | 5.32e-01 | 83.5% | 75.8% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 51.0 | 6.06e-01 | 80.4% | 89.7% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 50.0 | 5.96e-01 | 79.4% | 90.9% |
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 49.0 | 5.60e-01 | 85.6% | 81.1% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 50.0 | 5.65e-01 | 79.4% | 83.6% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 49.0 | 5.78e-01 | 83.5% | 89.7% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 47.0 | 5.50e-01 | 82.5% | 83.1% |
| 4c92A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 58.0 | 5.17e-01 | 85.6% | 56.9% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 48.0 | 5.98e-01 | 77.3% | 100.0% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 47.0 | 5.45e-01 | 79.4% | 83.1% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 51.0 | 5.72e-01 | 83.5% | 88.0% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 47.0 | 5.47e-01 | 79.4% | 85.9% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 35.0 | 4.88e-01 | 72.2% | 91.7% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 49.0 | 4.75e-01 | 82.5% | 62.9% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 37.0 | 4.89e-01 | 77.3% | 94.0% |
| 3pggA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 49.0 | 5.45e-01 | 82.5% | 87.2% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 40.0 | 4.54e-01 | 84.5% | 72.6% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 36.0 | 4.23e-01 | 78.4% | 68.1% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.69 | 34.0 | 4.72e-01 | 76.3% | 100.0% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.68 | 35.0 | 4.64e-01 | 78.4% | 100.0% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 35.0 | 4.38e-01 | 77.3% | 85.7% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 47.0 | 5.21e-01 | 81.4% | 88.6% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.66 | 44.0 | 4.54e-01 | 83.5% | 71.0% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.66 | 36.0 | 4.68e-01 | 82.5% | 100.0% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.65 | 44.0 | 4.23e-01 | 90.7% | 61.5% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 48.0 | 5.23e-01 | 88.7% | 92.6% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.64 | 38.0 | 3.11e-01 | 71.1% | 33.7% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.61 | 37.0 | 2.95e-01 | 73.2% | 30.4% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.57 | 39.0 | 2.89e-01 | 70.1% | 42.1% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 4.24e-01 | 94.8% | 86.7% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 37.0 | 3.23e-01 | 77.3% | 79.0% |
ECOD (67)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4813032 | 4.1.1.328 ↗ | beta barrels › SH3 › SH3 › SH3 › Sm_like | 0.93 | 73.0 | 8.13e-01 | 94.8% | 100.0% |
| 4656461 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.88 | 43.0 | 5.46e-01 | 77.3% | 78.3% |
| 1263519 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.87 | 44.0 | 5.50e-01 | 81.4% | 79.0% |
| 3473732 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 50.0 | 6.13e-01 | 80.4% | 87.7% |
| 4123180 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.86 | 45.0 | 5.09e-01 | 83.5% | 66.7% |
| 3602785 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 49.0 | 6.23e-01 | 80.4% | 93.3% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.85 | 45.0 | 4.68e-01 | 84.5% | 56.7% |
| 4058174 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.85 | 46.0 | 5.64e-01 | 81.4% | 81.5% |
| 4499953 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.84 | 43.0 | 5.43e-01 | 80.4% | 81.7% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.84 | 45.0 | 4.97e-01 | 84.5% | 65.0% |
| 3172870 | 4.1.1.67 ↗ | beta barrels › SH3 › SH3 › SH3 › FDF | 0.83 | 49.0 | 4.96e-01 | 80.4% | 60.0% |
| 3783301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 49.0 | 4.80e-01 | 80.4% | 56.2% |
| 2167708 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 48.0 | 5.83e-01 | 83.5% | 89.2% |
| 4646501 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 44.0 | 3.65e-01 | 81.4% | 33.5% |
| 5037228 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.80 | 46.0 | 5.58e-01 | 77.3% | 86.2% |
| 5038431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 47.0 | 5.54e-01 | 77.3% | 82.9% |
| 5044296 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 53.0 | 5.91e-01 | 83.5% | 91.0% |
| 4485354 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.75 | 48.0 | 4.93e-01 | 81.4% | 67.0% |
| 3621457 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.74 | 49.0 | 5.69e-01 | 82.5% | 92.9% |
| 3258918 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 49.0 | 4.80e-01 | 82.5% | 62.9% |
| 3502962 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.73 | 51.0 | 5.63e-01 | 81.4% | 87.5% |
| 3221732 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.73 | 52.0 | 5.66e-01 | 82.5% | 88.7% |
| 4340758 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 45.0 | 5.27e-01 | 77.3% | 87.1% |
| 171891 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.72 | 38.0 | 4.98e-01 | 80.4% | 92.7% |
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 50.0 | 4.88e-01 | 84.5% | 66.3% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 48.0 | 5.25e-01 | 92.8% | 82.5% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 58.0 | 5.94e-01 | 85.6% | 91.6% |
| 5060199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 57.0 | 5.56e-01 | 83.5% | 90.5% |
| 4613812 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 53.0 | 5.63e-01 | 94.8% | 88.2% |
| 3168781 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.71 | 51.0 | 5.01e-01 | 85.6% | 68.6% |
| 3420348 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.70 | 36.0 | 4.56e-01 | 80.4% | 87.3% |
| 4555816 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 46.0 | 4.96e-01 | 87.6% | 77.6% |
| 4228570 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 48.0 | 5.33e-01 | 82.5% | 86.3% |
| 3586487 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 35.0 | 3.76e-01 | 77.3% | 55.3% |
| 3570399 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 39.0 | 4.59e-01 | 78.4% | 83.1% |
| 4073433 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 46.0 | 5.10e-01 | 86.6% | 85.0% |
| 4000280 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 36.0 | 4.60e-01 | 80.4% | 90.9% |
| 3598052 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 52.0 | 5.44e-01 | 89.7% | 86.7% |
| 3852545 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 36.0 | 4.42e-01 | 80.4% | 85.0% |
| 3795121 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.66 | 38.0 | 4.53e-01 | 84.5% | 84.6% |
| 3233110 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.65 | 49.0 | 4.89e-01 | 82.5% | 76.5% |
| 552 | 4.1.1.61 ↗ | beta barrels › SH3 › SH3 › SH3 › KapB | 0.65 | 44.0 | 4.23e-01 | 90.7% | 61.5% |
| 3218198 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 33.0 | 4.12e-01 | 77.3% | 83.6% |
| 3299797 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.65 | 35.0 | 4.28e-01 | 81.4% | 85.0% |
| 5069300 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.64 | 51.0 | 5.01e-01 | 83.5% | 90.5% |
| 3474715 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 39.0 | 4.63e-01 | 88.7% | 92.3% |
| 4017204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.63 | 50.0 | 5.02e-01 | 83.5% | 84.0% |
| 5003274 | 4.1.1.222 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6948 | 0.63 | 54.0 | 5.59e-01 | 95.9% | 100.0% |
| 3965254 | 4.1.1.222 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6948 | 0.62 | 53.0 | 5.39e-01 | 93.8% | 94.7% |
| 4979743 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 50.0 | 3.89e-01 | 87.6% | 90.7% |
| 5048147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.54e-01 | 80.4% | 91.4% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.60 | 37.0 | 3.96e-01 | 86.6% | 72.5% |
| 3251948 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.58 | 32.0 | 3.85e-01 | 89.7% | 85.0% |
| 143109 | 2007.1.1.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase1_like | 0.57 | 39.0 | 2.89e-01 | 70.1% | 42.1% |
| 5050188 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.33e-01 | 81.4% | 82.2% |
| 4426077 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.57 | 42.0 | 3.59e-01 | 77.3% | 78.7% |
| 3928711 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.47e-01 | 92.8% | 90.6% |
| 3240204 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.55 | 38.0 | 3.60e-01 | 71.1% | 74.8% |
| 3413401 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 2.73e-01 | 84.5% | 77.1% |
| 3354387 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.54 | 40.0 | 4.21e-01 | 84.5% | 89.4% |
| 3251414 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 42.0 | 4.03e-01 | 89.7% | 73.6% |
| 3214653 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 4.15e-01 | 90.7% | 83.2% |
| 3922426 | 4.1.1.363 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 | 0.53 | 40.0 | 3.69e-01 | 91.8% | 63.3% |
| 3276059 | 5.1.4.329 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 | 0.53 | 43.0 | 2.90e-01 | 90.7% | 85.4% |
| 3925088 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.52 | 36.0 | 2.86e-01 | 74.2% | 67.4% |
| 4105189 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.52 | 35.0 | 3.58e-01 | 70.1% | 75.8% |
| 3839134 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.51 | 37.0 | 3.76e-01 | 77.3% | 98.0% |