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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00117
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00117
Identity
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 501-695
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00274__D10-149
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lbuA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.79 | 52.0 | 6.38e-01 | 83.6% | 100.0% |
| 2zfzD00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 24.0 | 3.82e-01 | 85.6% | 82.3% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.56 | 37.0 | 4.44e-01 | 71.8% | 97.7% |
| 1r44A00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.54 | 42.0 | 4.21e-01 | 81.5% | 94.6% |
| 3dcaA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.65e-01 | 94.9% | 88.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3326540 | 304.113.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 | 0.54 | 33.0 | 4.11e-01 | 79.5% | 100.0% |
| 3711102 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.53 | 22.0 | 3.10e-01 | 86.7% | 76.0% |
| 3961855 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.53 | 42.0 | 4.17e-01 | 82.1% | 92.5% |
| 3620972 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.52 | 21.0 | 2.95e-01 | 96.9% | 78.3% |
| 3978719 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.51 | 40.0 | 4.01e-01 | 81.5% | 92.0% |
D2
medium
residues 1-164
Domain cluster:
rep: NC_031927.1__YP_009322945.1__BOW86_gp012__00012__D1-139
D3
medium
residues 165-264
Domain cluster:
rep: MT135025.1__QIW90349.1__GCAPEGMB_00002__00002__D177-255