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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00120
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00120
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-87_124-150_254-370
Domain cluster:
rep: BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00154__D5-45_65-83_193-306
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lowA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.65 | 24.0 | 3.67e-01 | 91.8% | 79.8% |
| 6u9hF02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.61 | 20.0 | 3.11e-01 | 76.4% | 71.4% |
| 4aq1A04 | 2.60.40.3450 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 23.0 | 2.86e-01 | 70.7% | 58.3% |
| 1u5qA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 23.0 | 3.16e-01 | 84.1% | 79.2% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 26.0 | 3.47e-01 | 88.0% | 85.6% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 20.0 | 3.05e-01 | 93.8% | 85.0% |
| 3jzyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 25.0 | 3.11e-01 | 86.5% | 72.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995818 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 46.0 | 5.88e-01 | 90.9% | 96.8% |
| 4257969 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 28.0 | 3.47e-01 | 91.8% | 69.8% |
| 4627678 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.56 | 28.0 | 3.68e-01 | 93.3% | 84.2% |
| 4122624 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.55 | 28.0 | 3.67e-01 | 92.8% | 84.2% |
| 3967437 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.54 | 28.0 | 3.78e-01 | 93.8% | 92.7% |
| 3966543 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.52 | 28.0 | 3.65e-01 | 81.7% | 90.8% |
D2
high
residues 158-245