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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00127

Bact-Vir

LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00127

Identity

Kingdom:
phage

Quality

55.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 168-274
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 4.24e-01 72.0% 83.5%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 33.0 3.02e-01 96.3% 41.4%
2wp8B00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 42.0 3.35e-01 80.4% 42.9%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 40.0 3.81e-01 76.6% 92.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 39.0 4.09e-01 77.6% 93.9%
5mrvA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 38.0 2.79e-01 78.5% 30.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 38.0 3.01e-01 78.5% 75.3%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.72e-01 79.4% 69.8%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.68e-01 74.8% 70.4%
1ayeA02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 37.0 2.75e-01 79.4% 32.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3372166 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.64 39.0 2.59e-01 89.7% 14.8%
3606650 6132.1.1.0 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.64 31.0 3.17e-01 76.6% 45.7%
5049973 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 34.0 3.09e-01 81.3% 38.6%
3777742 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 45.0 3.11e-01 87.9% 86.0%
4030162 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 46.0 2.74e-01 90.7% 93.1%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.56 34.0 3.71e-01 71.0% 74.1%
3871823 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.56 45.0 2.94e-01 88.8% 89.2%
4500042 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 45.0 2.97e-01 88.8% 88.1%
3816041 2004.1.1.299 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.55 41.0 3.05e-01 77.6% 66.8%
3993788 2011.1.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 0.51 38.0 2.73e-01 77.6% 30.6%
3743072 3435.1.1.2 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.50 35.0 3.23e-01 73.8% 66.9%