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LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00205
Bact-VirLacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00205
Identity
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-69
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bm4A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.62 | 42.0 | 2.94e-01 | 71.0% | 68.5% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 42.0 | 2.71e-01 | 71.0% | 88.8% |
| 3f9tA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.61 | 42.0 | 2.73e-01 | 71.0% | 70.9% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.50e-01 | 100.0% | 68.7% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 45.0 | 3.06e-01 | 80.6% | 31.8% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.59 | 52.0 | 5.03e-01 | 100.0% | 91.4% |
| 8eefB01 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.58 | 45.0 | 3.66e-01 | 87.1% | 69.0% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 38.0 | 3.54e-01 | 71.0% | 64.2% |
| 8h6rA01 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 40.0 | 3.62e-01 | 75.8% | 63.5% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 3.56e-01 | 100.0% | 45.0% |
| 2g8kA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 43.0 | 3.42e-01 | 87.1% | 62.5% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 40.0 | 4.28e-01 | 90.3% | 98.1% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 41.0 | 3.40e-01 | 82.3% | 60.7% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.53 | 36.0 | 3.31e-01 | 71.0% | 85.4% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 41.0 | 3.99e-01 | 100.0% | 73.9% |
| 1hu3A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 37.0 | 2.60e-01 | 74.2% | 24.0% |
| 2ph5A02 | 3.30.360.30 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like | 0.52 | 46.0 | 2.96e-01 | 98.4% | 87.2% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 45.0 | 4.06e-01 | 98.4% | 71.3% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.52 | 46.0 | 4.06e-01 | 100.0% | 98.9% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 37.0 | 3.55e-01 | 75.8% | 94.4% |
| 3e3rA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 39.0 | 3.44e-01 | 85.5% | 92.9% |
| 3ol4A02 | 1.10.10.2390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 41.0 | 4.21e-01 | 96.8% | 91.7% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 4.26e-01 | 100.0% | 100.0% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.50 | 45.0 | 3.90e-01 | 100.0% | 67.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4053786 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.66 | 50.0 | 4.21e-01 | 82.3% | 81.0% |
| 3285567 | 5069.1.1.17 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF6529 | 0.65 | 49.0 | 3.56e-01 | 80.6% | 64.4% |
| 5035425 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.65 | 57.0 | 4.82e-01 | 100.0% | 74.3% |
| 2408 | 531.1.1.1 ↗ | alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C | 0.63 | 52.0 | 4.48e-01 | 96.8% | 57.4% |
| 4629803 | 531.2.1.3 ↗ | alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › FliG_M, FliG_N | 0.63 | 53.0 | 3.89e-01 | 98.4% | 33.3% |
| 4649235 | 531.3.1.1 ↗ | alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG › FliG_N | 0.63 | 52.0 | 4.84e-01 | 100.0% | 75.0% |
| 3839506 | 531.1.1.2 ↗ | alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C+FliG_M+FliG_N | 0.62 | 52.0 | 3.35e-01 | 100.0% | 18.5% |
| 2141248 | 531.3.1.1 ↗ | alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG › FliG_N | 0.61 | 53.0 | 4.50e-01 | 100.0% | 58.1% |
| 3856933 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.61 | 41.0 | 3.66e-01 | 71.0% | 80.0% |
| 3630114 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.60 | 42.0 | 3.23e-01 | 72.6% | 62.1% |
| 4643202 | 2008.1.1.181 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HaeIII | 0.58 | 47.0 | 3.15e-01 | 100.0% | 20.0% |
| 3430186 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.58 | 44.0 | 3.11e-01 | 82.3% | 61.5% |
| 3176995 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.57 | 47.0 | 4.30e-01 | 100.0% | 69.0% |
| 3309133 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.56 | 43.0 | 3.86e-01 | 82.3% | 61.2% |
| 3518519 | 101.1.17.18 ↗ | alpha arrays › HTH › HTH › FF domain › FF_PRPF40A | 0.56 | 48.0 | 4.88e-01 | 100.0% | 96.7% |
| 3966950 | 5069.1.1.57 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PepSY_TM | 0.56 | 44.0 | 3.24e-01 | 88.7% | 85.9% |
| 3264275 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 49.0 | 4.12e-01 | 98.4% | 94.3% |
| 3406010 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 47.0 | 4.08e-01 | 100.0% | 81.0% |
| 4259065 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.54 | 40.0 | 3.87e-01 | 83.9% | 78.7% |
| 5051616 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.53 | 45.0 | 2.88e-01 | 100.0% | 23.7% |
| 3228409 | 5001.1.1.16 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srt | 0.53 | 43.0 | 2.76e-01 | 90.3% | 29.8% |
| 3612380 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 44.0 | 3.93e-01 | 93.5% | 68.9% |
| 3740332 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.53 | 41.0 | 3.81e-01 | 87.1% | 80.0% |
| 3588656 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 3.42e-01 | 98.4% | 60.7% |
| 5063915 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 4.09e-01 | 96.8% | 80.0% |
| 3242517 | 4009.1.1.3 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 | 0.52 | 43.0 | 4.10e-01 | 100.0% | 76.0% |
| 4575460 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.52 | 38.0 | 3.25e-01 | 79.0% | 97.3% |
| 4478129 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.52 | 45.0 | 4.07e-01 | 100.0% | 74.4% |
| 3857154 | 101.1.2.151 ↗ | alpha arrays › HTH › HTH › winged helix domain › COR | 0.52 | 44.0 | 3.63e-01 | 98.4% | 51.7% |
| 5028644 | 7516.1.1.26 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 | 0.52 | 38.0 | 2.52e-01 | 79.0% | 73.0% |
| 1031090 | 3705.1.1.1 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › T2SS_PulS_OutS | 0.52 | 46.0 | 4.06e-01 | 100.0% | 98.9% |
| 4958183 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.51 | 45.0 | 2.78e-01 | 100.0% | 41.3% |
| 4931792 | 306.3.1.6 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DEAD_assoc | 0.51 | 43.0 | 3.16e-01 | 100.0% | 85.6% |
| 3875142 | 601.11.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Perilipin | 0.50 | 44.0 | 3.00e-01 | 98.4% | 55.7% |